Ppyg019257.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000387.1:392624-401507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 6.5 7.6 1.2 1 23 265 287 265 287 0.98 2 10 5.7 3.3e+02 2.2 0.4 1 23 294 316 294 317 0.90 3 10 0.53 31 5.5 0.1 1 21 320 339 320 340 0.93 4 10 3.6e-05 0.0021 18.6 1.5 2 23 349 371 349 371 0.97 5 10 2.5e-05 0.0015 19.1 0.2 1 23 380 402 380 402 0.97 6 10 6.6e-05 0.0038 17.8 1.9 1 23 407 429 407 429 0.98 7 10 0.00042 0.025 15.2 0.9 1 22 437 458 437 462 0.93 8 10 0.00034 0.02 15.5 0.8 1 23 467 490 467 490 0.98 9 10 7.8e-05 0.0046 17.5 1.0 1 23 496 518 496 518 0.98 10 10 4e-05 0.0024 18.4 0.8 2 21 528 547 528 548 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCATTTCTATGTTTTATATGTCACAACACAGTGGACTTAGATACTAATGAAGTCACGCGGGAGAAATACCGAGAAGTCGTCGGAATAAACCTATGTCCGGACTCGCAGTTATGTTACATTTGCCATCACATGTTGAACAAGCTCTGGATGTTCAGATCTATCTGTTTGAAAAGAAGTTTAGAATATCCCGTACTGTTTAGAGAAAAGGGATCCGTAAACCTATACCGTACTGAAATAAAGACTATTATCCTTTGCACAGACGAGACTTGCTTACCGAATAGTGCCAATCAAGTGTACGTAGAAAACAGAGACCAAAGTATTAATAGCAATGATTATTTTAAATTAGAAGATGACCATGAAAGAGTAGAAGAATATTTACCAGACACTGGCACAGAGAACGGTAAAGCGGATATGGAAATAGAAATAGATATCAATAAAGATGAAGAAAGTAAAGATTTTGATGACAATAATGATACGCGATCAGAAAATTATGACAAAAATGATTCTGTGACTGAAAGTGACAATACGTTTGACAATAAAGAACTTCATTCGGAATTGGAAATAAAAATTGAGCGGCAGAATGATGATTGTGATAATTATGATGAAAAAAGTGAATATGTAATTGAAACGAATCAAGAATCTAATGTGGGATCAGGAACTTCAAAAAAGAAGACAAAATCAAAGAAATCAAAGAAGAAAGACTTTGAGAAGATAGTTCTGTCTTTAGAAGAGCAGAAGTCAGAGTTAGAAGCACAGAGAAAGAGTAAGAAGTACGTAGAGGCAGAGTTTAAGTGCTACAACTGTGCGCTCGGGTTCCTGTTCAAAGATACCTACCAGGCTCACATGATGAGGCACGAAGAGTCTAACGGCGAGCACGTGTGTTTGCTGTGCGCGCTGCGCTTCGCGTCGGGCGGCGTGCTGCGCTCACACGCTGCGCAGCACCACACGCGCTACCGCTGCGCGCGCTGCGCCCGCACGGTGACGTCACGCCAGCTGGCGCGCCACGCGCGGAGCTGCGGCGCCGAGGGGGCGAAGGCCACCTGCCACTTATGTGGACGAGTGTTtcaAGATGTAAGCGGTCTTCAACAGCATTTAAGAAGGTTCCACCTGACGAAAACCAGCAATCGAACCTACGCGTGCAGCGTGTGCGGCAAGAACTACAACAACCAGGCCGCCGTGAGGACGCACATGATTAAGCACATCCACCAAAAGTTCTCGTGCGATCAGTGTCCGTCGACGTTCAGCAGCCCGTACACCCTCACCCAGCACAAGAAGAAGCACTCGGCCGCGGACAGCGCGGAGCACTACTGCGCGCGCTGCGGCCGCGGGTACTCCTCCAGGAAGAGCTTGCTGGCACACCTCCGCACTTCCGCCAACCACCAGCAGAGGGCGTTCGAGTGTCCAATGTGTAACCGCCTCTGCCCCACGTCTCGCGCCCTCTCGTCCCACATGTCCACCGTGCACTCGGCACACAAGCCGTTCCGTTGTGTCTCGTGCGACGCCCGCTACAGCAGCCGCAAGTCCCTCGTCAGACATATCAGATCGCACACCAGCGTCACACAACACAAGCTAGCTGTCTGTCATATTTGTGGAAGTAGCTTTAAGGGTAAAAGTAAACTGAACCGACACCTGCGCGAAGTTTGCGAGAAAGACAAACTGGAGGAAGAGCTGTCGACTTATTACGAACAACATGTTATGTAA
- Protein Sequence
- MSSFLCFICHNTVDLDTNEVTREKYREVVGINLCPDSQLCYICHHMLNKLWMFRSICLKRSLEYPVLFREKGSVNLYRTEIKTIILCTDETCLPNSANQVYVENRDQSINSNDYFKLEDDHERVEEYLPDTGTENGKADMEIEIDINKDEESKDFDDNNDTRSENYDKNDSVTESDNTFDNKELHSELEIKIERQNDDCDNYDEKSEYVIETNQESNVGSGTSKKKTKSKKSKKKDFEKIVLSLEEQKSELEAQRKSKKYVEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEHVCLLCALRFASGGVLRSHAAQHHTRYRCARCARTVTSRQLARHARSCGAEGAKATCHLCGRVFQDVSGLQQHLRRFHLTKTSNRTYACSVCGKNYNNQAAVRTHMIKHIHQKFSCDQCPSTFSSPYTLTQHKKKHSAADSAEHYCARCGRGYSSRKSLLAHLRTSANHQQRAFECPMCNRLCPTSRALSSHMSTVHSAHKPFRCVSCDARYSSRKSLVRHIRSHTSVTQHKLAVCHICGSSFKGKSKLNRHLREVCEKDKLEEELSTYYEQHVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -