Ppyg017449.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000190.1:2494980-2506242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 90 4.0 0.3 2 23 6 27 5 27 0.96 2 13 0.0035 0.2 12.3 0.6 3 23 999 1020 997 1020 0.90 3 13 1.7e-05 0.00098 19.6 1.7 2 23 1126 1147 1125 1147 0.97 4 13 0.00014 0.0084 16.7 2.5 1 23 1153 1175 1153 1175 0.98 5 13 0.0019 0.11 13.1 3.8 1 23 1181 1203 1181 1204 0.96 6 13 0.65 38 5.2 1.0 5 23 1217 1235 1216 1235 0.96 7 13 0.02 1.2 9.9 1.1 3 23 1242 1263 1241 1263 0.96 8 13 0.025 1.5 9.6 0.2 2 23 1280 1300 1279 1300 0.97 9 13 0.0011 0.062 14.0 0.6 1 20 1306 1325 1306 1328 0.91 10 13 0.015 0.88 10.3 0.4 1 23 1336 1358 1336 1358 0.98 11 13 0.0057 0.33 11.7 7.2 1 23 1364 1386 1364 1386 0.98 12 13 7.1e-06 0.00041 20.8 1.4 1 23 1392 1416 1392 1416 0.98 13 13 0.0011 0.064 13.9 4.2 1 23 1422 1444 1422 1445 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTAGTGCAGTGCCCTGTCTGCACGCTGTTCCTACATAATGGGATGTCCCTGGAATCCCATTTAGATACACATCCTAAAGACCAGGTTATAAAAGCTTTGTGTAGTTTGACCTCAACCAAAGGCTCTAGCTATGGAAGCAGGACCTCTACACCTATGCATTCTGAGCGCTCCTACAGGAGCAGATCTCGGACACCTGCTACTGATGACAGCGCCAAGTGGACTGGATCTCGTAGTACTGAACATGATCGCTATTGGCGTAGGACACCAAGTAGAACCCCGAAAACAACTCCATTGTCAAATTCATCACGAAATGGCACTCCAGAAATGAGATTGATTGATGTCAACTTTGAGAGCCATGCTGGTTCTGGTAGTGTGCCGGGACAACATGTAAATACTCAATTTCTTATGAAAGGTGATAAAGTTCAACAGAATTTTCAATCTCCTCCAGTGACAGATTATGATCCTCAATATGTTTACTACCCAGATCAACAAGAGGACAGAGAGATAAAGTATTCCCGGAGTGCTGAGTACAATGCAATGGACAATGGTAACAATTTGTTTACTTACAATGTTCCAACTATGGGGGGACCAGGTGTCAAATTCTTACCAGCTGTACCTAGAAGAGCCAATGACCTTGCTAAAGGTCTACCAAAATCAAATAATATACTTCTAAAATCCAACATGGGTGGAGTACAATACATGGGCCCCGGAGTGAAGCCTATGCATGTTATGGTGCCTACAGCCCCTACCTTTGTTCAGAAGAATGTACAAAGCAATATGATAATGACGGGTAATTTACCAAACTCACAGATGCAAGTTGGTACCAAAACAACTACCCCCCCTCTAGCTAGCAACCAACTGAACCAAATTACTTCTGGTGCATTTACTCCAGGTACTACTGTGGTTACCCAAAATTCCCAAATCATTTACCGAGAAATGGTCCACAACTTAGATGGTAAACCATTTGTAACTAGTATGCCTACAGTTCTGGGTAGTCATGAGAATGTTACTAATTTAGCTCAAGCTAGCTCTATGTATCAAAATGTTATGGTTGTAGACCAGTTTGGAAATACCTCATGTATGTATACAACACCACAGCAAATGATGCCCAAAGGATGTGCAACAACAATGTATGATGAGAATGGGGCTTTAGTGCACATGGAAAAATCTGTTCGAAATATGAATGATCCAAAAACTCTCATCATTGAAGTAGGTCCATTCTTAACACCTCCTACTAATGGTGTTCATGAAGATCTAAGATCTTCTGCTCAACAACAGCCAGATACAAGTACTTCAGTTGAAGAAAATGAGATACCAGTAGAGAATACAGACCCTAAATGTGATTCATCAGTAAGTACTAAAGGTTTGAAAATTCTTAGTAACATTAAAGTTGAGGTACCAGTGCAGCATCACAAAAATATGGTGAACACTGTGATGGACCTCACTGGATCCACTGAGTCAGAATATCTTGTAGAATGTGTAGACACACCTAATAAGATTGTAAGAGACATAGATGAGAACAACCAGTTGTTGTCTGAAGACACACAGCCATCATCCATGTCCAGTGTTGATAGCATGACCTCTTCATTTTCTGTGATAAAAAATGTTGGTAATCCAATAAAAACTTCCATAGATGACAAAGTCGACACTGACTTCTCAGATAGCTGTCCTGTGCCAGATTTAATTTGTAATGAAAAGCCTTCCATATCACCTTGTAGTGAGTTGTCAGAAAATGGCGACAATTCAATTGATCGTACCTCAATGTCTCCCAAACCTGAAAGTAGTCAAATTAGCCATAGTAACATAGAACTTCCAAAGAAAGTTCAGCTCTCACAGAAGCCATATAGGCACAACACACTAAGACTGAACAATATTTTTGTGAAGAAGCACAAGAAAGTTTTACAAATCAAGAATGCTAAAAAGTTCCCAAATGCTAAAAATAAAACCGAAACAAACAATTCTCCGACGTCGTCTATTTGTAGATCCCCAGAAAATTTTTCCATGAATAAATTGCATCAAGTTGATAAGATAGACATAAAAGAGAAGCCTAACCTCTTACAAACTGTATCTTTAGATGTGATCAAGCAGAATGATGAGAATAATGACTTTGATGTGGACACAGAAGAACAATCCATGGACATAGAACCAGTAGCACCTATCAGTATGAACCAATCTGATGAGTTTGGTGCTGGCCTTGACATGGTGCAGGTGAAGGAGGAAATAAACTCAAGTAACGAAGGAGGCTTCAGCAATGAGACAGTGACGTCGGATCGCGTGTTAACTTCTCTAGAAACTTTGCGTCCCATTAATGTCATCTCGTATGATAATGGGGAATTCGATGAACACTCCAACGACAGGGAGTTATTAGACCTTGAAGCGGCGTCTAAAAACAAACAGTTTGTCAGCATGATGAACGAAAATTATTTTGGCAACGATATTTATGCAGACTACTTTACTCCCGATCGCGTTGAGGCGTTTGACGCCGAACGCGAGGTGGCAGGGTTCAAGGAGGTTCCAAAAGATGGTATGTACAACATTTGGGGTGAGAGTTCTCAAAAGGAAAATGATTTTGTTCTGCCTAACTTTATACACGAGAGTTACAAAATAGCTGAGAGTAATGGGATAGATTATTCAGAGCTAGGTGCTAGAGAGGTGCAGGTGGATGTGGAAGTGGATGGGTGCGAGCGAGACAGCAAGGCGGATGTACTCAGCGAGGGCCGCAGCGAGAGCGACCCACCCATGAACATCTGCGCCGACGAGCGTATGCCGCCGCGCGGAGAGCTCAGCGGACAGGAGAGCAACGGAGACATGGAGTCGCCCTGGAGTGGGATGTATACCGAGGTGACGCCCTCCGAGCCCTACGACCTGATCGCGCGCGAGAGCTGGGTGTCGGACGGCTCTGAGGTTGACGCGACCGAGAAGAGAGAACCTATCGAAGAAGTCCTTCCCCTACCGGTGACGTTCCCGAAGTGTCGCGTGCACCTGTGCCCCGTGTGCGGCGCCAAGTTTGCGTCGCTGAAGGAGCTGCGCGCGCACAAGGCGCATGCGCACGCGCTGCCCACGTGCTCCGTCACCAAGACCACGTACCGGCGGCTCGTCACCGCTAGGACCATCAAGAAGGAAGAGAAGACTGATAATATCCATTTGTCAAGCAGTCTACTAACCTTAGACTCCAAGGAATCAATAACCTCCACCATCTTGAAGGTGTACGACACATGTATAGAAGAAACCAAGCCTAAGATAGAAGTAGACCGCTTAATCAAGCAAGAGGTCAAGCGGAGACGCAAGGATTATGTCTGTCCTACGTGTAAAGTAGACCAGGAGACCGATGCAGCCTTCCATGCTCATCTCAAGATACATCCGCTAGAGTGCCTCACTTGTGGAAAGTGTTTCTTCAGGAGAGCGAATCTTGCGCTGCATATAAAGACACATTTAGGAATTAAGAATTATAAATGTGACGTTTGTGAGAAGCGGTTCGTGACGCGACAGAAGCTGATGGAGCACCACAACGTGCACACTGGACGGGCGCCCTTCAAGTGTACCATATGTGATGATACCTTTAGAAGATACTCCAATATGGTGCAGCACAGAGACCGGCACCACTTCCACAAGCGCGCGAAGGTTCGCGACTACGTGTGCCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCTGTGGCACAAGGAGACGCACGACGACAAGCCCAAGGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGACGGACGCACAACGAGTACTTCCTGTCCGACCGCCTCAAGGGCAAGGGCGAGAACGTGCAGTGCCCCGTCTGCAAGCAGATCTACCTGCGCGCCAACCTGCGCACGCACCTGCTGACGCACTCGGGCGCGAGGCCGCACGTGTGCGTGGTGTGCAGCAAGGCCTTCACGACGGCCTGGAACCTCAAGCTGCACCGCTGGACGCACGCGTCGCGCTCCGCCAAGCCCTACAAGTGCGCGCTGTGCAAGGGCGCCTTCATCCGCCACGCCGAGTACGTCAGCCACATGAACGCGCACAAGTCCGTGCGGCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGGCGGAGTGCGGCAAGTCGTTCCACCGCAGCTACTACCTGTCGGAGCACATGAAGGTGCACAGCGGCGCGCGGCCCTTCGCCTGCAACATCTGCGGCAAGACGTCGTCCAACAAGTCCAACCACAACAAGCACGTGAAGATCCACCACGCGCGCGAGCCCGTGGCCACCGAGGCGTAA
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCSLTSTKGSSYGSRTSTPMHSERSYRSRSRTPATDDSAKWTGSRSTEHDRYWRRTPSRTPKTTPLSNSSRNGTPEMRLIDVNFESHAGSGSVPGQHVNTQFLMKGDKVQQNFQSPPVTDYDPQYVYYPDQQEDREIKYSRSAEYNAMDNGNNLFTYNVPTMGGPGVKFLPAVPRRANDLAKGLPKSNNILLKSNMGGVQYMGPGVKPMHVMVPTAPTFVQKNVQSNMIMTGNLPNSQMQVGTKTTTPPLASNQLNQITSGAFTPGTTVVTQNSQIIYREMVHNLDGKPFVTSMPTVLGSHENVTNLAQASSMYQNVMVVDQFGNTSCMYTTPQQMMPKGCATTMYDENGALVHMEKSVRNMNDPKTLIIEVGPFLTPPTNGVHEDLRSSAQQQPDTSTSVEENEIPVENTDPKCDSSVSTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGSTESEYLVECVDTPNKIVRDIDENNQLLSEDTQPSSMSSVDSMTSSFSVIKNVGNPIKTSIDDKVDTDFSDSCPVPDLICNEKPSISPCSELSENGDNSIDRTSMSPKPESSQISHSNIELPKKVQLSQKPYRHNTLRLNNIFVKKHKKVLQIKNAKKFPNAKNKTETNNSPTSSICRSPENFSMNKLHQVDKIDIKEKPNLLQTVSLDVIKQNDENNDFDVDTEEQSMDIEPVAPISMNQSDEFGAGLDMVQVKEEINSSNEGGFSNETVTSDRVLTSLETLRPINVISYDNGEFDEHSNDRELLDLEAASKNKQFVSMMNENYFGNDIYADYFTPDRVEAFDAEREVAGFKEVPKDGMYNIWGESSQKENDFVLPNFIHESYKIAESNGIDYSELGAREVQVDVEVDGCERDSKADVLSEGRSESDPPMNICADERMPPRGELSGQESNGDMESPWSGMYTEVTPSEPYDLIARESWVSDGSEVDATEKREPIEEVLPLPVTFPKCRVHLCPVCGAKFASLKELRAHKAHAHALPTCSVTKTTYRRLVTARTIKKEEKTDNIHLSSSLLTLDSKESITSTILKVYDTCIEETKPKIEVDRLIKQEVKRRRKDYVCPTCKVDQETDAAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNYKCDVCEKRFVTRQKLMEHHNVHTGRAPFKCTICDDTFRRYSNMVQHRDRHHFHKRAKVRDYVCQCGAVFHSRAKLLWHKETHDDKPKACLYCSDKFVHAASLTRHVRRTHNEYFLSDRLKGKGENVQCPVCKQIYLRANLRTHLLTHSGARPHVCVVCSKAFTTAWNLKLHRWTHASRSAKPYKCALCKGAFIRHAEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -