Basic Information

Insect: Protodeltote pygarga
Gene Symbol: Bcl11a
Assembly: GCA_936440985.2
Location: CAKZFI020000073.1:17671-24800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.048 2.8 8.7 5.4 1 23 244 266 244 267 0.93

2 11 3.4 2e+02 2.9 0.1 3 23 276 297 274 297 0.90

3 11 0.067 3.9 8.3 1.5 2 23 302 324 301 324 0.96

4 11 0.00067 0.039 14.6 2.0 1 23 328 351 328 351 0.98

5 11 8.2e-06 0.00048 20.6 2.7 2 23 355 377 354 377 0.96

6 11 6.3e-05 0.0037 17.8 1.4 2 23 381 403 381 403 0.95

7 11 0.031 1.8 9.4 1.8 2 21 416 435 415 440 0.92

8 11 9.8e-06 0.00057 20.4 0.2 2 23 449 471 448 471 0.95

9 11 7.3e-05 0.0043 17.6 3.2 1 23 477 500 477 501 0.96

10 11 0.00032 0.018 15.6 0.5 3 23 511 531 510 531 0.98

11 11 0.0001 0.0059 17.2 1.9 1 23 537 560 537 560 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.048	2.8	8.7	5.4	1	23	244	266	244	267	0.93
2	11	3.4	2e+02	2.9	0.1	3	23	276	297	274	297	0.90
3	11	0.067	3.9	8.3	1.5	2	23	302	324	301	324	0.96
4	11	0.00067	0.039	14.6	2.0	1	23	328	351	328	351	0.98
5	11	8.2e-06	0.00048	20.6	2.7	2	23	355	377	354	377	0.96
6	11	6.3e-05	0.0037	17.8	1.4	2	23	381	403	381	403	0.95
7	11	0.031	1.8	9.4	1.8	2	21	416	435	415	440	0.92
8	11	9.8e-06	0.00057	20.4	0.2	2	23	449	471	448	471	0.95
9	11	7.3e-05	0.0043	17.6	3.2	1	23	477	500	477	501	0.96
10	11	0.00032	0.018	15.6	0.5	3	23	511	531	510	531	0.98
11	11	0.0001	0.0059	17.2	1.9	1	23	537	560	537	560	0.98

Sequence Information

Coding Sequence: ATGGATTTAAAAGACGAGTGTGATCGTTTATTTAAAATCTGTCAGGGTTGTTTGAGCCCCGACAGGAAGATTTCCCTTTTAAACGTACAAGATAAAGTTCTATTTTTAAAACTAAGGGACGAAGGCAAACGTCATGAGGATGAAAATCAAGTGCACTTGTGTTGGGAATGCATCGCACTGCTGAACAAGATGAAAAAGTTTCAGTGTCGCATTAAAAAAGCACAATATTTGCTGATGCAATGCCTACAAACATGTTATAATAATAAGGACCTCATGCAAACACTATCTAATCTAATAACCAAACAAACCTACCAATTCAGCCACGAATTTACTCATGAAAAAACAATTAACACAAATCTAGCAGAAATACTACCTCAAAAAGAAGAAATCCAGAATGATATAGAAACAGCTATAAAACAAGAAAATGACGACATAAAAGAAGAATACTACAGCAATTACGAAACAGAAAACTTTGAACCTTACGACGAAGACCAAGAACCTAAAATAGAGACTGATTTTTTAAACCAAAAACCTATAATATCGAAAAGCCAGAAATCTCAAGTCTCTATAAAAAGTTATTTGAAACATGTGACTATTACAAAATGTATGACCAGTAATGGTGCGTTTAAAAAAGTTGATGAGTTTGCTGAACTTGCTTTCTTAACTGAAAAAGAAATAGAAGAGATTTTGGGTAAAGATAGAAGAGGGTTCGGGTATTCTCGAATGCCTCATAAATGTAAGGAATGCAAGATTGGATATAGAACGCTTTTAGATTTACAGAGACATAAAACATTTCACCATAACCAATGTGAATACCCCACTCCCTGTTTAGCCTGTAAAAAGGAAATACCTACAGAATCGGACATGGAAACCCATTGGAAAGACTTCCACTCCCCCGTGTTGAGGTGTACCCTATGCTCCGAACTGTACATGTCTAAGGAGCTTATGAAAAAACACTTAAAAAAGAGTCATTCTAGAACTTATACTTGTAATGATTGTTTACAGGAATTTAGAAACCTGCGAGAATTCAGTACGCATTATAGAAAGGTCCACGAGAGAGTTGTATGTGATTACTGTAACAAAAGCTATAGTTATAAACGAAAATTGGAACATCATATTAGACGATACCACATCCCAGCGTACTGTCCTATCTGCAACCGTTCATTTACAACATACCGGAGCTTCGAAAAACATAATAAGGTTTACCATCCTGAGCAGGCTTGTGACACGAGGAAAGAATTATGTTACTGTGTGGAGTGTGATAAGCAGTATCCTAGCGTCTACACGTATAAAAGACATCTGCAGCAATCTGCCAGACATCGGCCCAAGAAGAAAGTCAGagTACCATGTCCAGATTGCAACAAAGTCTTTTCAAGAACTGCGTACATGAATAATCACTATAGACTAATCCATATGAAGGAATCTAAACATTACTGTGAAATTTGCAATAAGTATTTTTCCAATGGCTATGGGTTACGCAAGCACATTAAAGTAATACACCATAAAATGGCTCTACCGAAGGATAAAATATGTGATTTATGTGGAAGAGGATTTAGTACAAACAGAATTTTAATAAACCACCGTCGTACTCACACAGGGGAACGTCCCTTCAAATGTAAGTACTGCTCAGCTACATTCGCACAAGAGACAGCGATGAAGACGCATCAGAAGACACAACATAAAAGTGTTATTGACTTACCGCCTGGCTAG
Protein Sequence: MDLKDECDRLFKICQGCLSPDRKISLLNVQDKVLFLKLRDEGKRHEDENQVHLCWECIALLNKMKKFQCRIKKAQYLLMQCLQTCYNNKDLMQTLSNLITKQTYQFSHEFTHEKTINTNLAEILPQKEEIQNDIETAIKQENDDIKEEYYSNYETENFEPYDEDQEPKIETDFLNQKPIISKSQKSQVSIKSYLKHVTITKCMTSNGAFKKVDEFAELAFLTEKEIEEILGKDRRGFGYSRMPHKCKECKIGYRTLLDLQRHKTFHHNQCEYPTPCLACKKEIPTESDMETHWKDFHSPVLRCTLCSELYMSKELMKKHLKKSHSRTYTCNDCLQEFRNLREFSTHYRKVHERVVCDYCNKSYSYKRKLEHHIRRYHIPAYCPICNRSFTTYRSFEKHNKVYHPEQACDTRKELCYCVECDKQYPSVYTYKRHLQQSARHRPKKKVRVPCPDCNKVFSRTAYMNNHYRLIHMKESKHYCEICNKYFSNGYGLRKHIKVIHHKMALPKDKICDLCGRGFSTNRILINHRRTHTGERPFKCKYCSATFAQETAMKTHQKTQHKSVIDLPPG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -