Ppyg015323.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000147.1:462915-465708[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.37 22 6.0 0.2 2 21 172 191 171 192 0.93 2 18 1.5e-06 8.7e-05 22.9 1.8 1 23 199 221 199 221 0.98 3 18 0.23 13 6.6 0.2 2 23 225 245 224 245 0.96 4 18 5.3 3.1e+02 2.3 0.5 2 11 270 279 270 280 0.93 5 18 0.34 20 6.1 0.8 2 23 321 343 320 343 0.92 6 18 0.0095 0.55 11.0 2.0 1 23 349 372 349 372 0.96 7 18 0.0044 0.26 12.0 0.5 1 21 376 396 376 397 0.94 8 18 0.00014 0.0084 16.7 0.8 1 23 405 428 405 428 0.95 9 18 0.92 54 4.7 1.0 1 23 433 456 433 456 0.85 10 18 0.00023 0.013 16.1 0.5 2 23 469 490 468 490 0.96 11 18 0.0029 0.17 12.6 1.2 1 23 496 518 496 518 0.98 12 18 0.21 12 6.7 2.8 2 23 524 544 524 544 0.97 13 18 4e-05 0.0023 18.5 0.6 2 23 550 571 550 571 0.97 14 18 1.3 78 4.2 0.2 2 23 576 596 575 596 0.90 15 18 8.7e-05 0.0051 17.4 3.6 1 23 643 665 643 665 0.98 16 18 0.00052 0.03 14.9 1.2 2 23 671 692 670 692 0.96 17 18 0.0015 0.088 13.5 0.6 1 23 698 721 698 721 0.92 18 18 0.042 2.4 8.9 1.0 3 23 728 749 727 749 0.95
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAAAATGAAACTTAAAAATGTTCTTTACAGTACCCAATTCTGTGGAATATGTTTAGAAAACAACGATAATACGAATATGAGCTCCATTGACGAGACGTCAGAAGTTATTATGAATCAACGGACTCGAGTAATTGTAAACCTTAGATCTATGTTGGACGTTGTTATCAAAGATGCTGAAAATATTTTAGCAAGTCCACAAATATGCAAAAGTTGTATAGAAAACATAATCCAATCATATATTTTTATTGAAAACACCAGAGAGACCTCAAAGATTTTACTGAACTATATAAATGATTTATTTACTAAATCTGATGATATTTTCAACCATTTGACCGATTCTAGTCAAGAAAGTTCAAATGTTGTCATTGTATTAGAAAATGAACTTGATCCTCTTGTTAAAGATAATGTAACCAATAGGGTTGAAAATACAGAAGAAGTAACAAAAGACATTAAAGAAATGAATAAGAATATAAGCCCAGACCTTAAAAAGTGTCCTCAATTAAAATGTGCAAACTGCAATACCATCCTACCCTCACATAGAGAACTAAAATTGCACATAGAAAAATGTGAGAAAATCCAATTATTTGAATGTACAGTATGTTTTAAAACATTTACTAGTCAACAGAATTTGACTGCACATTATAAAATACATTCTAAAATCAAATGTAGTGTATGTGAAGAAAATATTAATTACAGTGCATTATCAGAACACCAAAAAACACATGAAGGTTATTTTCCCTATTTTAAATACAATGATGCCTTGAAAATAAGTCATTCAACTCTAAATGAACATCCACAATGTAAGATGTGTCTTAAAACCTTTAAAATAGAAGAAATACGATTTCATAATTGCAAATTCAGTTGTCCAGAATGTTCTGAAATTCCTTGTATGCATCATAAGTATTTGATGTCTTATAGAGAACAGATTTTTAATCATGCAGTCAACATTAAATGTTTGGATTGTGACTATGTTTGCAAAAAGAAGGACATTTTACTCGGTCATGTGAATCGGGAACATTTAGATCACCATCCTTACACTTGCGATAAATGTGGGCAACAGTTTTACTCCAAAGTTATTTTGAGTGCTCATATACACAGGTTTCACAAAGATTATTTTGTATGCCAATACTGCGATTCAGAGTTCAGTAATCTCTTCAACTACGAAAGTCATGTGAAAAGTTGTGAAGATATTAAAAGGAAGTTTATTTGCAATGATTGTCCTGCCTCTTTTGATTCTTCTAACAGTTTGATGAAGCATAAAAAACAAAGGCACAGTCAGGATGTTTTCCCCTGTGGTCTTTGCAACAAGAAGTTTTTAAAGGATTCTAAAAGAAAAGAGCATATGGTCAAAGTGCATAGTGGCATTCAAGGGAAAAATTTAAAACTGAATGTAGAATGTGTTGTGTGCCAAGAAAAGTTTAAAACTAAACAAGAATTAGTACAACATATGAATTTTCACAGCTCTAACACTAAATATCCATGCAGGGTTTGCAATACAGAGTATGATACTTTGAGACAATTCAGTGCTCATTATCGAAAACACAAAGGTCCTTTCGCCACTTGCCATGTTTGTGGAAAGAAAATGAGAGAAATACTACTTAAAAAACATCTGACTACCCACACTGAAGCTATAGAAACATGTGAAACTTGTGGGAAGTCTTTCCCAAACATCACAATGTTAAAATACCATCAAAAAGTTCATTTAGAAAGTGTACCATGTCCTAAATGTCAGAAAATGATAAATCCAGCAAGAATGCGTCGACATTTTAAAGCACATTTAGCGGAGAAGAATCCTGAATTAAGAATATTAAAAAAGCAGCAGCCTAACTTAAAATGCGAGCAATGCGACTACAAGACATGGAATAACACTCTTTTAGAATGCCATGTTAACCGTCACCATCTTAAAATCAAACCTTATGTATGCCATATATGCAGCAAAAACTTTATCGGCAAACACTTATTGAGGAAGCACTTGGAATCACATGAATTGAAAAGCGTTGTCTGCATGGTTTGTCTGAAGAGTTTTGCCAATTCTACTTGTTTGAAAATGCATTTACGAATTCACACCGGCGAAAAGCCTTTTACTTGTGAAATATGTGGCGAAAGATTTAGATCTTCCAGTATTATGAATGTTCACAAAATCAAAAAACATTCAGATAAGAGAAATGCTTGTCCATTGTGTTCTAATAAATTTCATACTGTACGGGATTTAAGGAGACATGTCATTAAAGTGCACTGGAAGCAGAAAAATAAGAGGTTTGACCCTAGAGAGTTGGAAGGGTTGGCTAAAGAACATTATGATTTGTTCCATGATGGTAGAAGGGTTAAAGTTTCTGAAGCAGATATTGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MDSFKMKLKNVLYSTQFCGICLENNDNTNMSSIDETSEVIMNQRTRVIVNLRSMLDVVIKDAENILASPQICKSCIENIIQSYIFIENTRETSKILLNYINDLFTKSDDIFNHLTDSSQESSNVVIVLENELDPLVKDNVTNRVENTEEVTKDIKEMNKNISPDLKKCPQLKCANCNTILPSHRELKLHIEKCEKIQLFECTVCFKTFTSQQNLTAHYKIHSKIKCSVCEENINYSALSEHQKTHEGYFPYFKYNDALKISHSTLNEHPQCKMCLKTFKIEEIRFHNCKFSCPECSEIPCMHHKYLMSYREQIFNHAVNIKCLDCDYVCKKKDILLGHVNREHLDHHPYTCDKCGQQFYSKVILSAHIHRFHKDYFVCQYCDSEFSNLFNYESHVKSCEDIKRKFICNDCPASFDSSNSLMKHKKQRHSQDVFPCGLCNKKFLKDSKRKEHMVKVHSGIQGKNLKLNVECVVCQEKFKTKQELVQHMNFHSSNTKYPCRVCNTEYDTLRQFSAHYRKHKGPFATCHVCGKKMREILLKKHLTTHTEAIETCETCGKSFPNITMLKYHQKVHLESVPCPKCQKMINPARMRRHFKAHLAEKNPELRILKKQQPNLKCEQCDYKTWNNTLLECHVNRHHLKIKPYVCHICSKNFIGKHLLRKHLESHELKSVVCMVCLKSFANSTCLKMHLRIHTGEKPFTCEICGERFRSSSIMNVHKIKKHSDKRNACPLCSNKFHTVRDLRRHVIKVHWKQKNKRFDPRELEGLAKEHYDLFHDGRRVKVSEADIDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -