Ppyg018142.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000216.1:538399-541121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0025 0.14 12.8 5.9 1 23 153 176 153 176 0.97 2 17 0.0029 0.17 12.6 1.3 1 23 185 208 185 208 0.96 3 17 0.017 1 10.2 0.7 2 23 221 243 221 243 0.97 4 17 0.00061 0.036 14.7 1.3 1 23 252 275 252 275 0.96 5 17 4.9e-05 0.0028 18.2 1.6 1 23 287 310 287 310 0.97 6 17 0.00012 0.0073 16.9 0.7 2 23 334 356 333 356 0.97 7 17 0.00022 0.013 16.1 1.7 2 23 366 388 365 388 0.96 8 17 0.025 1.5 9.7 1.1 2 20 393 411 392 413 0.91 9 17 0.00017 0.0098 16.5 0.4 2 21 418 437 418 440 0.95 10 17 0.37 22 6.0 3.6 3 23 450 471 449 471 0.93 11 17 0.00017 0.0097 16.5 3.8 1 23 476 499 476 499 0.94 12 17 0.00035 0.021 15.5 1.2 2 23 511 533 510 533 0.95 13 17 0.0012 0.068 13.8 4.4 1 23 555 578 555 579 0.94 14 17 0.31 18 6.2 1.5 2 23 612 633 611 633 0.97 15 17 3.7 2.2e+02 2.8 0.7 3 23 641 663 639 663 0.88 16 17 0.019 1.1 10.1 0.1 1 23 699 721 699 721 0.97 17 17 0.08 4.7 8.1 1.9 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGGCAGACCTAGATGTTAAAGTTAAGGTAAAGATAGAAGATGATGTCAAAACAAGGAAAGATCCTACCTCATTTTTACCCGAGGAACCAATGTCCTATGAAATTAAAAAGAAGAAGAAAAAGAAAAAAAAGCGGCAAGAAGACCCATTTAAGGATATCGATGATAAGATGGAGCATGTTAAAATTGAGCCTGTCACATTTTTAGACCCAGAAGTTAATATCAAAGTGGAAGATATAGAAGTGGAATTGGATTTTAATGATTTTACAGACAACAGTGGCCTACTAGTTGAAGGTCCTCAAAGCGAGGATAGCCAAGAACCAGCAGTCAAAATAGAGGAACAAAACCACGATGCCGTCTTACTCACCTTCGAAAGTGTTATTACCGAAAAAAAACCACTTCAAAACCCAGATATATATCCATTTAACAACGAACTGCCATTAGAACCTGCGCCTACCCACGTCTGCAAAGTTTGTCACCTAGTCTTCCAATCACAGAAAACCCTTCGCATGCACCAGAAAAGGAAACACAAGTCTTTTAGAAAGTCATTCAAACACATCTGTGATTACTGCAGCATGTCTTACGAGATGAAAAATAGCCTAGTAGCTCATATAAAAAGAAAACACGGACCAAACTCTATGCCAGATGACATTGAAGAAAGGACTTGTGAAATCTGTGCTCTCGTTTTCAAAGGCATGACTAGATTACGGATGCATATGAGAAGAAAACATGATTCTTTCCAGGATTCCTTTAAACACATTTGCAAAGACTGTGGATTAACATACGATAAATACAGAAGTTTGATTGTCCACATACAGCGTAAACACACTAATAAAAAGAAACCTGAAATAAGTCAGTGGTACAGCTGCCCATTCTGTCCAAAAATGTTTACAAAAAGGGAAACGTATGCCCGACATGTGCAAAGAAAACATCGGATAGATGAAAATTTGAAAAAAGATAGTGAATATTTGGAAAACTGTACGAATGAACATGGTGAAATTACGTGCAAAGAATGCCCTCTAGTCTTTTCTTCGGTTAATTTTTTGAAACTACATATGAGGAGGAAGCATAATGCTTTGAAGGAAGATTTTAGATTGAAATGTAAGATATGTAACTTATCCTATAATAAGGTGGAGAGTCTAAAAAGGCATGTGAGAAGAAAACACGACACTAATTCATACTGTGAAGTGTGTAATAAACAGTTTGATACACGAGAAAGTTATCTAAACCATTCTCATACGAAAGTTATTAGGGAATGTAATATTTGTGGGCTAATTTTCGCGTCCCAAGGCGGTTTAGCAAAACACATGAGGTGCACACACAAATTAGATTCACCTAAAACCGTGTTTTGTCATGTCTGTAACGAAGGTTTCCATGACAAACGTCAGTTGAAGCCGCATTTTATGAAAGTGCATTTAAAAGTTTCATATACTTGTAAGTATTGCAAAAAGGTTTTTAAAGCTAAAGAGAGTTATAGGCGACACGTAATGTTTAAGCATCCAAACGCAAATCCCTTTAATGCACAGACGCAGAAATGCGATCAGTGTAACGCAACGTTTAAAGATGAATTTGAGCTATGCCGTCACATAGATATAGAACATGGTCGTCCTGAAGGACAAGAAATGTTAGAAATTAAAAAAGAAGATGTGGATATAAAGGATCGTTTCCAATGCACAAAGTGTCCGGAACAATTCTTCACTTGGGAACATTTAAAATTGCACTACGAGCAGAATCATCACAACGTTGAAGATACTCAGTGTCAAATATGCGGACAACTTCTCCCGGGGAATGAATTACAGAAACATATTAAACTATTACACACAGACACAGAAATGCAGTGCAAATATTGTGAATTCAAAACTCAAATTAGAGCTAGTATGACCCAACATATGCTGCGGCATAAAAATGCTGAAACCATAAACTGTGATTACACTGGTTGTAGATATAAGACGTTTTACGAAGGTGCTATGGAAAAGCATAAGAGAAAACATGCAGATCAAGGAGTTAAACTCCAATGTGCAAAATGTCCGTTTCAAACCATGAATAAATACATACTTAAATACCATGAAGAAGCGCATCAAACTGGCAAAAAGCGGTATATGTGCGACCAATGTGATTACGCAACGATATTGCCAGCTAATTTAGTTCAACATAAGTATAAGCATTCGTCAGAAAAAAGGTTTAAATGTGAAGTGTGTCCGTTTGCAACAAAATACAACACATCACTACGCTTCCATGTTAGAAAGAAACATTGTGATCTCCCGACGCTCAGTTGA
- Protein Sequence
- MADLDVKVKVKIEDDVKTRKDPTSFLPEEPMSYEIKKKKKKKKKRQEDPFKDIDDKMEHVKIEPVTFLDPEVNIKVEDIEVELDFNDFTDNSGLLVEGPQSEDSQEPAVKIEEQNHDAVLLTFESVITEKKPLQNPDIYPFNNELPLEPAPTHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHICDYCSMSYEMKNSLVAHIKRKHGPNSMPDDIEERTCEICALVFKGMTRLRMHMRRKHDSFQDSFKHICKDCGLTYDKYRSLIVHIQRKHTNKKKPEISQWYSCPFCPKMFTKRETYARHVQRKHRIDENLKKDSEYLENCTNEHGEITCKECPLVFSSVNFLKLHMRRKHNALKEDFRLKCKICNLSYNKVESLKRHVRRKHDTNSYCEVCNKQFDTRESYLNHSHTKVIRECNICGLIFASQGGLAKHMRCTHKLDSPKTVFCHVCNEGFHDKRQLKPHFMKVHLKVSYTCKYCKKVFKAKESYRRHVMFKHPNANPFNAQTQKCDQCNATFKDEFELCRHIDIEHGRPEGQEMLEIKKEDVDIKDRFQCTKCPEQFFTWEHLKLHYEQNHHNVEDTQCQICGQLLPGNELQKHIKLLHTDTEMQCKYCEFKTQIRASMTQHMLRHKNAETINCDYTGCRYKTFYEGAMEKHKRKHADQGVKLQCAKCPFQTMNKYILKYHEEAHQTGKKRYMCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- -
- 80% Identity
- -