Basic Information

Insect: Protodeltote pygarga
Gene Symbol: Bcl11a
Assembly: GCA_936440985.2
Location: CAKZFI020000184.1:464254-475051[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.023 1.4 9.8 5.7 1 23 263 285 263 285 0.98

2 12 9.7e-05 0.0057 17.2 1.2 2 23 293 314 292 314 0.95

3 12 0.11 6.4 7.6 1.4 1 23 318 340 318 340 0.97

4 12 0.00014 0.008 16.8 2.7 1 23 345 368 345 368 0.97

5 12 0.0013 0.075 13.7 0.2 3 23 374 395 373 395 0.96

6 12 0.013 0.77 10.5 0.2 2 20 410 428 409 434 0.92

7 12 4.7e-05 0.0027 18.2 0.5 3 23 444 465 444 465 0.98

8 12 0.014 0.8 10.5 0.2 2 23 484 506 484 506 0.96

9 12 0.001 0.06 14.0 4.0 2 23 518 539 517 539 0.96

10 12 0.00012 0.0069 17.0 3.4 1 23 545 567 545 567 0.99

11 12 1.7e-07 1e-05 25.9 0.2 1 23 573 595 573 595 0.98

12 12 0.00078 0.046 14.4 1.3 1 23 601 624 601 624 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.023	1.4	9.8	5.7	1	23	263	285	263	285	0.98
2	12	9.7e-05	0.0057	17.2	1.2	2	23	293	314	292	314	0.95
3	12	0.11	6.4	7.6	1.4	1	23	318	340	318	340	0.97
4	12	0.00014	0.008	16.8	2.7	1	23	345	368	345	368	0.97
5	12	0.0013	0.075	13.7	0.2	3	23	374	395	373	395	0.96
6	12	0.013	0.77	10.5	0.2	2	20	410	428	409	434	0.92
7	12	4.7e-05	0.0027	18.2	0.5	3	23	444	465	444	465	0.98
8	12	0.014	0.8	10.5	0.2	2	23	484	506	484	506	0.96
9	12	0.001	0.06	14.0	4.0	2	23	518	539	517	539	0.96
10	12	0.00012	0.0069	17.0	3.4	1	23	545	567	545	567	0.99
11	12	1.7e-07	1e-05	25.9	0.2	1	23	573	595	573	595	0.98
12	12	0.00078	0.046	14.4	1.3	1	23	601	624	601	624	0.98

Sequence Information

Coding Sequence: ATGGAAAACGTAAAAATATGCCGTATTTGTTTAAATATGGACGTAAAACTATACGACCTGCGCTCATATCCATTAGAATCATATTACGCTTCAATTATGATTGAAAGTAAGCCCATGTACACCACAACCTTGCCGTCATCAGTCTGCTTTGAATGTGCAGCCCTGGTGAAGAAGTTTTACTCATTTAGACAGAAGTGTCTAAGCAGTCAGGCTCTACTTTGTGGAATAATAGATGGCTGTGGAAAGTTATCATCAGATGTAATCAAATCGATAGAGAGACAGAATCTCCTTGCGACCTCAAATATCTCACACATTGATATACAAGAAAATGAAGAGAGTCTAAGAGATACCCCAGATGTTACATCTGTTATTGTACAAGTTGGTATTAAAAAAGAAGATGACGATGATAATATGCTTGATCATCATGACCCTGCGTCTAGTGATGATGAGTGTAAAAGAGAAGAAATAACGGGAGTGGAGAAAGTTGAGATTCTTGTGAAGTTAGATGTTAATGAGGAGGTGGAACCTACTGAAATAGAGAAAGTAACAGTATTGCCATTTGAAAAAACTCCAATAGCGAAAACAAAAAAGCTAAACAAACAAGTTAGACCTAAGAGGACGTGTAGTGCCGCCAAGAAGCCAAAGGAAGACGTGAAGGATGAAGTTGACGACATCAGTGAAGACAAGACGGATATGGACGACATTACTGTTATTACTTTATCGGTGGCAGAGCAACTAGAAGAAATGAACAAACGTAAGCAGTCCTCCAACTACCTCAACTGCCCTTACCAGTGCCACTTATGCTACAAAGGGTTCAACAACACACACACCTGGAAACTACATGTTAGCAAACATTCTCCGAGTGCAGGTGACCTGGAATGCGCGATATGCAAGTACAGGTTCAAAACGAAGCGCACTCTACAAAGGCATGCGCTTAACCACGGCAAGAGATATGTGTGTAAACTATGTCCGTACCACTCCAGTAACGTCACCACAGTGAAGCAACACCAAGGATCTCATAAAGGCGTTACGCACAAGTGCAAAGTTTGCGATGAAGTCTTCACAGTAAGAACAACATACGTCAGTCACATGCGCAACAAGCATCCTTCGGAGAACATCTGCGGCTTCTGTGGGTACTCCTTCTACAGCAAACAGGGGCTACTGGTTCACAAGAATATGGTTCATAAGGATGATGCAGTGAAAGCCGAGAAGATTAAAGAGAGTCAGTACTGCGCAGAATGTGATGTCAAGTTCATATCTACAGAAGCGTACAAGCGACACATGGTGATGTCTGTCAAACATACGCCGAATCCAGACGTTATCAACGGTTGTCGAGTGTGCGGCGCGACGTTCTCCGATCCTGAAGAGTTACGGGTTCACCATCGCAAGGAGCACCCCAAGAGACAACCCAGATACTACCATCTGAAGAGCACCCACAAGTGGCCCGCCAAGTGCGAACATTGTCCGGAGGTGGTGCCAAATGCTCGTGCTTACTGGAAACACTTCCGCCTCGTACATCCGAATGAGAACTACCCTGTGCAGAAGAAATGCGTCTGTGATATATGTGGGAAACGGTTTACGTGCAACGCCCAACTAGTGATGCACAAACGCACTCACTTCGGGGACCGTCCATACAAATGTTCGCAGTGCGACAAGGCTTGCTTCACGGCGTTCGACCTGAGAGTGCACCAGCAGAAACACTCCGATACCAGACCCTTTCCCTGCACCGTGTGCCCTAAGGCTTTCAAGAGGAAAGAAGCTCTGGAGAGGCATTTGAAAATCCACTCGGGCGACAACCCGTACAAGTGCGAGATCTGCGGCGTGGCCTTCAACAAGTCGTGCACGCGCACCCTGCACGTGCGCACCGCGCACACGCACGAGCCCGCGCCCCGCAGGAAGCCGCGCCACAAACACTAG
Protein Sequence: MENVKICRICLNMDVKLYDLRSYPLESYYASIMIESKPMYTTTLPSSVCFECAALVKKFYSFRQKCLSSQALLCGIIDGCGKLSSDVIKSIERQNLLATSNISHIDIQENEESLRDTPDVTSVIVQVGIKKEDDDDNMLDHHDPASSDDECKREEITGVEKVEILVKLDVNEEVEPTEIEKVTVLPFEKTPIAKTKKLNKQVRPKRTCSAAKKPKEDVKDEVDDISEDKTDMDDITVITLSVAEQLEEMNKRKQSSNYLNCPYQCHLCYKGFNNTHTWKLHVSKHSPSAGDLECAICKYRFKTKRTLQRHALNHGKRYVCKLCPYHSSNVTTVKQHQGSHKGVTHKCKVCDEVFTVRTTYVSHMRNKHPSENICGFCGYSFYSKQGLLVHKNMVHKDDAVKAEKIKESQYCAECDVKFISTEAYKRHMVMSVKHTPNPDVINGCRVCGATFSDPEELRVHHRKEHPKRQPRYYHLKSTHKWPAKCEHCPEVVPNARAYWKHFRLVHPNENYPVQKKCVCDICGKRFTCNAQLVMHKRTHFGDRPYKCSQCDKACFTAFDLRVHQQKHSDTRPFPCTVCPKAFKRKEALERHLKIHSGDNPYKCEICGVAFNKSCTRTLHVRTAHTHEPAPRRKPRHKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -