Basic Information

Insect: Protodeltote pygarga
Gene Symbol: -
Assembly: GCA_936440985.2
Location: CAKZFI020000030.1:652048-664155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00098 0.057 14.1 0.7 1 23 216 238 216 238 0.98

2 12 0.0045 0.26 12.0 1.1 1 23 245 268 245 268 0.96

3 12 0.0028 0.16 12.6 0.9 1 23 272 294 272 294 0.97

4 12 0.0061 0.35 11.6 4.0 1 23 299 322 299 322 0.98

5 12 0.00063 0.037 14.7 0.3 2 23 327 349 327 349 0.92

6 12 0.011 0.67 10.7 0.1 3 20 367 384 366 385 0.95

7 12 0.0006 0.035 14.7 1.0 2 23 399 420 398 420 0.97

8 12 0.00024 0.014 16.0 2.2 2 23 440 462 439 462 0.95

9 12 6.3e-06 0.00037 21.0 1.9 2 23 472 493 471 493 0.97

10 12 2e-05 0.0012 19.4 2.5 1 23 499 521 499 521 0.98

11 12 2.8e-07 1.7e-05 25.2 0.9 1 23 527 549 527 549 0.98

12 12 3.5e-06 0.0002 21.8 1.8 1 23 555 578 555 578 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00098	0.057	14.1	0.7	1	23	216	238	216	238	0.98
2	12	0.0045	0.26	12.0	1.1	1	23	245	268	245	268	0.96
3	12	0.0028	0.16	12.6	0.9	1	23	272	294	272	294	0.97
4	12	0.0061	0.35	11.6	4.0	1	23	299	322	299	322	0.98
5	12	0.00063	0.037	14.7	0.3	2	23	327	349	327	349	0.92
6	12	0.011	0.67	10.7	0.1	3	20	367	384	366	385	0.95
7	12	0.0006	0.035	14.7	1.0	2	23	399	420	398	420	0.97
8	12	0.00024	0.014	16.0	2.2	2	23	440	462	439	462	0.95
9	12	6.3e-06	0.00037	21.0	1.9	2	23	472	493	471	493	0.97
10	12	2e-05	0.0012	19.4	2.5	1	23	499	521	499	521	0.98
11	12	2.8e-07	1.7e-05	25.2	0.9	1	23	527	549	527	549	0.98
12	12	3.5e-06	0.0002	21.8	1.8	1	23	555	578	555	578	0.98

Sequence Information

Coding Sequence: ATGGAAAGGTTAACTGTGTGTAGGATATGTTTAGTAGATAACGTCCGTATGCACGAAGTTACAGACAGATACTTACAAGAAACATATGAGAAGATCACTAATATTCAGTTCGACACAGACCTAAGGCCGTTATTAGCGTGCTTCATCTGTCACTCCCGACTGAAAAACTGTCACCAGTTCATGATAAAATGTCTGGAGGCTGAAGACTTGTTCTCTCAGATCATTAGTGAGGATTCCAAGTTAAAACCATTAAAGTTAGAAGGCATAGACACCTCTAATGGACTAACCATAGCCTCAATACAGCAAATAAATATAACTGAAATATTTGAAACCGCTGTAAAAAAAGAAATTCCGGTACAGTTTGAAAGAAATGATGGCCATCTAAAACAGGAGCACATTGATGAATTTCACTCGGAGCCTACAGAACATAGTCCCGACGAGGTAGAAGATAATCAACCATCGGACTCAGAGGATGACATTCCTCTGACCAAAATAAAAACAGAAGTGCAGCCTAAGAAGAAAAGAATCAGAGTGAAGTTTAAGAAAAATCACAAACTCGATGCGCACGAGATTATTTTGAGTAAAGAACAACAAATAGAGAACTTGGTGGCTAGATCGAAATCGATGAATTATAACAACTCGCCGTACAAGTGTGATATCTGTTACAAAGGCTTTGTGGATTCAAGGGCGTATGATAACCATAAAATTAGACACGATGAGTGTAGCGGCTCTCACATCTGCGACATATGTCGTATGCGCTACCCCACGACACAACAACTGCGCACGCACACCATCACTGCGCACGCGCGCTTGTTCAAGTGTAACAAGTGTGGAGAAGTCACTCATACAGCGAGCCAAGCGAGAATCCACGAGAAATGGCATTATGGGCACACGTACGAATGCCGGCTGTGTAGTCACACGTTCAGGAAGCCGACATCCTACCTCACACACGTTCGGAAACAACACCCAACTGAAAATGTGTGTAATATTTGCGGCGAGAGCTTCGTGGGGAAACATGGACTGCAGATGCACAAGAGCTTAGCGCATAAGAATGATGAAATGGTAGAAAATGCTGAAGAACCTGCTTCCGACAGGTTCTGTAGTGAGTGTAATATACAATTTTCTAGTCTCGAGGCGTGGAAACGACACATTTTGTGTTCAATTAAACATACCTTGAGGAAAGAACATAGCTCACAGTGCAGTATATGTGGACACCGTTGCGTCGGCAACGCGGCCCTCGCGACACACATGAGGGAACACGCGAGGTCTCTCAAACACAGACATCAGAAGAGAGTCGGCGACACACATTTACGATGTGAGTGCCAGCAGTGTGGCTCAAACTTCGAGAATCGGTCTAAACTACAAGCACATATCAACAGAACGCATTTAGGATTGAAATACAATAAGAATATCGTGTGTGAGGTGTGTGGGAAGAAATGTacgTCAAACGCCACTCTGAAGTATCACCAGCGCACGCACACGGGGGAGAGGCCGTACCCCTGCGGCTCTTGCTCCAAGCACTTCTCGGACAGCAACCAGCTGAGGATACACACCCGGACGCACACGGGGGAGAAGCCTTACGTGTGCACGTCGTGCGGGAAACGATTCACACAGAAACCGGCGCTGAACAGGCATTACAGAGTACACACCGGAATAAAACCTTACACCTGCCAGTACTGTTCCCGAACGTTCAGCCAGTCGAACTCATTGAACCTCCATGTAAAGACAGTGCATTTAAAACAACCGCCAAATACCAGGAAGAAGACACAAGAGAAAAAACAGGAAGACAGGATTCCACAAGAAATGCAAGCTGTAATAACATAA
Protein Sequence: MERLTVCRICLVDNVRMHEVTDRYLQETYEKITNIQFDTDLRPLLACFICHSRLKNCHQFMIKCLEAEDLFSQIISEDSKLKPLKLEGIDTSNGLTIASIQQINITEIFETAVKKEIPVQFERNDGHLKQEHIDEFHSEPTEHSPDEVEDNQPSDSEDDIPLTKIKTEVQPKKKRIRVKFKKNHKLDAHEIILSKEQQIENLVARSKSMNYNNSPYKCDICYKGFVDSRAYDNHKIRHDECSGSHICDICRMRYPTTQQLRTHTITAHARLFKCNKCGEVTHTASQARIHEKWHYGHTYECRLCSHTFRKPTSYLTHVRKQHPTENVCNICGESFVGKHGLQMHKSLAHKNDEMVENAEEPASDRFCSECNIQFSSLEAWKRHILCSIKHTLRKEHSSQCSICGHRCVGNAALATHMREHARSLKHRHQKRVGDTHLRCECQQCGSNFENRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGERPYPCGSCSKHFSDSNQLRIHTRTHTGEKPYVCTSCGKRFTQKPALNRHYRVHTGIKPYTCQYCSRTFSQSNSLNLHVKTVHLKQPPNTRKKTQEKKQEDRIPQEMQAVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -