Ppyg016970.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000184.1:489059-497441[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0032 0.18 12.5 2.9 1 23 282 304 282 304 0.98 2 12 0.0028 0.16 12.6 0.7 2 23 312 333 311 333 0.93 3 12 0.059 3.5 8.5 0.3 1 23 337 359 337 359 0.94 4 12 0.00021 0.012 16.2 1.3 1 23 364 387 364 387 0.98 5 12 0.00049 0.029 15.0 0.2 1 23 391 414 391 414 0.95 6 12 0.014 0.82 10.4 0.2 2 20 430 448 429 454 0.92 7 12 0.00029 0.017 15.8 2.1 3 23 464 485 464 485 0.97 8 12 0.21 12 6.8 0.7 2 23 505 527 505 527 0.97 9 12 2e-05 0.0012 19.4 1.3 1 23 538 560 538 560 0.98 10 12 2e-06 0.00011 22.6 2.1 1 23 566 588 566 588 0.99 11 12 4.3e-06 0.00025 21.5 0.8 1 23 594 616 594 616 0.98 12 12 1.6e-05 0.00094 19.7 0.4 1 23 622 645 622 645 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACGTGAAAGTGTGCCGTTATTGTCTCATTATGGATGTAAAGATGTATAACTTACAATCTTATACATTTGAATGTTATTTGGATTCAGTACTGGGAAAAATTAAGCATTCTAACTATGAAAAGCTGCCAAAATATGCTTGCTATGAATGTGCAACACTTATGAAAAAGTTTTACTTTTTTAAAAATAAATGTCAGAGAAGCCAAGCTGTTCTCTACGGAAGTATGGATGGATTTGGAAAGTTAACATCAGAAGACATAAAAGCAATTGACAGACAAAGTCTTCAATTTTCCTCAAACCTCTCCGTCACTATACTTGATACATTTGAATGTCTAGACACTACCCTAGAGATTAAAACCGAACCAGCCCTTGATGAAGAAAGGCCAAACGTTTCTATAGAGGATTGTGTAAAAGAAGAAGAATATGTTGATTTTGCTTTACCAGATCATGGCATATCTAGTGATGATGATGAACCTCTATCACTTCATAAACATAAGAAAACTAAACAGAAAAGAAAAGATAAAAAGCAGTTTGTTGATGAAGAGAAGCTAAATTTAATTGAAGAATTAGAAAATATTGAATTTGACCAAGCCACAGATAACCAACCAAAATTGATTAAAAGAAGAAAATCCTTAAAAGCTCCAAAAGGCGTAAAGAAGAAAAGAGGCAGACCTAAGAAGCAAGTTGAAGTACCAAAAAAGAACAGAGTAAATACTCATCTCTTTAGCGAAGATCTGAATGACATGAGACAGTATATTACTGTCATCCATTTGTCGGTTGACGAGCAATTGGAAGAGGTAAACAAGCGAAAAGAATCATCCAACTACCAGAACTCTCCATATCAATGCCACCTATGTTTCAAAGGGTTCATTGACACTGATGCTTGGAATCATCACGTTAGTAAACATTCGCCGAGTGCTGGAGATGTAGAATGCGCAATCTGTAAATTCAGGTTTAAGACGAAGCGTGCTTATCAAAAGCATGCATCTGGCCACGAGAAGAAATACGTCTGTAAAACGTGCCCCTATGTCTCTACCAACATGACTCAAGCTAAGCAACATCAAGGATGGCACAAAGGAGTCACGTTCAAATGTGAACATTGTGAAGAAATATTTACGGTTTGGACGTCGTATATGAGTCACGTGCGCATCAAACACCCTTCGGAGTTCATCTGCGGTATATGCGGGTACTCGTTCATCAGCAAACTGGGTCTCACCATGCACAAGTCTATGATGCATAAAGACGTTTTGGAAAAAATCGACGAAATTAAGGAAGAAAGTCAGTACTGCGCAGAATGTGATGTCAAGTTCATATCTACAGAAGCGTACAAGCGGCACATGGTGATGTCTGTCAAACATACTAGAAATACAGACTTTATCAAAGGTTGTCGAACCTGCGGCGAAACGTTCAAGAGTTCTGAAGAGTTACGGCTGCATCATCGCCAGGCGCACACGCGGAAACGACCCAAGAACTACGGCAAGAAACCTTCCAACCTAACCTGGCCGGCCAAGTGTGAACATTGTTCAGAAGAGATTCCTAACGCGCGCGAGTACTGGACCCACTTCCGTCGAGTACATCCTGATAAGAACTACCCCGTGCAGAAGAACCACGTGTGCGATATCTGTGGGAAGAGCTTTAGGGGCAACGCATTCCTGGTGTACCACAAGCGCACGCACTTCGAAGAGCGTGCGTACAAGTGTTCCCAGTGCGACAAGGCGTTCTTCAACCGCACCAACTTGCAAGTCCACGAGAAAACTCACTCCGACCACCGACCCTACGCTTGCAGCGAGTGTTTCAAAGCTTTCAAGAGTAAAGGAGCGCTAAATAGACACTTTAGAATTCACACAGGCCAGAAGCCGTACGAATGTGAAGTCTGCGGGAAAGGTTTTAGTCAGTCCAACACCAGGAAGCTCCACGTGAGGACAGTACATCTTAAACAACCAGCACCATACGTCAGCCGCAGCAGACTGGAACGACGACACAAACAGACGAAAGATAACACTCAACAGTATATTAATATTTATTGA
- Protein Sequence
- MEDVKVCRYCLIMDVKMYNLQSYTFECYLDSVLGKIKHSNYEKLPKYACYECATLMKKFYFFKNKCQRSQAVLYGSMDGFGKLTSEDIKAIDRQSLQFSSNLSVTILDTFECLDTTLEIKTEPALDEERPNVSIEDCVKEEEYVDFALPDHGISSDDDEPLSLHKHKKTKQKRKDKKQFVDEEKLNLIEELENIEFDQATDNQPKLIKRRKSLKAPKGVKKKRGRPKKQVEVPKKNRVNTHLFSEDLNDMRQYITVIHLSVDEQLEEVNKRKESSNYQNSPYQCHLCFKGFIDTDAWNHHVSKHSPSAGDVECAICKFRFKTKRAYQKHASGHEKKYVCKTCPYVSTNMTQAKQHQGWHKGVTFKCEHCEEIFTVWTSYMSHVRIKHPSEFICGICGYSFISKLGLTMHKSMMHKDVLEKIDEIKEESQYCAECDVKFISTEAYKRHMVMSVKHTRNTDFIKGCRTCGETFKSSEELRLHHRQAHTRKRPKNYGKKPSNLTWPAKCEHCSEEIPNAREYWTHFRRVHPDKNYPVQKNHVCDICGKSFRGNAFLVYHKRTHFEERAYKCSQCDKAFFNRTNLQVHEKTHSDHRPYACSECFKAFKSKGALNRHFRIHTGQKPYECEVCGKGFSQSNTRKLHVRTVHLKQPAPYVSRSRLERRHKQTKDNTQQYINIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -