Ppyg005356.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Protodeltote pygarga
Gene Symbol
-
Assembly
GCA_936440985.2
Location
CAKZFI020000037.1:1606665-1629964[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8.5e-05 0.005 17.4 2.2 1 23 426 448 426 448 0.97
2 20 0.0044 0.26 12.0 0.6 1 20 454 473 454 476 0.94
3 20 2.2e-05 0.0013 19.2 5.6 1 23 495 517 495 517 0.98
4 20 0.0001 0.006 17.1 4.1 1 23 523 545 523 545 0.99
5 20 3.9e-05 0.0023 18.5 5.3 1 23 551 573 551 573 0.97
6 20 3.1e-05 0.0018 18.8 7.2 1 23 579 601 579 601 0.97
7 20 7.6e-07 4.4e-05 23.9 2.9 1 23 607 629 607 629 0.97
8 20 0.00011 0.0063 17.1 6.7 1 23 635 657 635 657 0.97
9 20 0.00011 0.0063 17.1 6.5 1 23 663 685 663 685 0.97
10 20 5.2e-07 3e-05 24.4 1.9 1 23 691 713 691 713 0.98
11 20 5.3e-05 0.0031 18.1 7.9 1 23 719 741 719 741 0.98
12 20 3.7e-06 0.00022 21.7 7.6 1 23 747 769 747 769 0.98
13 20 1.1e-05 0.00063 20.2 4.4 1 23 775 797 775 797 0.98
14 20 2.5e-05 0.0015 19.1 6.0 1 23 803 825 803 825 0.97
15 20 1.2e-05 0.00071 20.1 5.0 1 23 831 853 831 853 0.98
16 20 3.3e-06 0.00019 21.9 6.0 1 23 859 881 859 881 0.98
17 20 6e-05 0.0035 17.9 7.8 1 23 887 909 887 909 0.97
18 20 4.6e-05 0.0027 18.2 7.4 1 23 915 937 915 937 0.96
19 20 0.00078 0.045 14.4 0.3 1 23 944 966 944 966 0.96
20 20 0.0048 0.28 11.9 4.8 1 23 976 998 976 998 0.99

Sequence Information

Coding Sequence
ATGAATCCAGAACACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGAACCAAAGAGTTCAATCAACACAGCAACAGCAGCAGAATAACTTGCCAGCCACGACATCTGCTACTGATCTCCGAGTGAACTCGGCTGCAGTGAACGTCGCTTTGTCTAGTGTCGCGAAATATTGGGTATTTACAAATTTATTCCCCGGGCCCATACCACAAGTGTCTGTGTATGGATTGCCTGCTGGAGCTAGGATAGAAAATGGAAAACCTGTTCAGGATCTTGGCCAGCATGCAAGTATACTAAATGGAGATCCAAATATTATACTTGGGCATCATGCAGGGCAATCTCAGGTGACTGTATCAGCTGCAGGAGGCCAGCAGATACCAGTATCACAAATCATTGCCACACAATCTGGACAAACACATGAAGCACTTGTTGCTCACAGTCAGCAAGCTGAGTTGGTGGCAGCCCAGGGCTCTAGCAACAATGCACAAGTATCAGTTAGTGCAGGGCAAGCCACTCATCAGCAGGTACCCACTAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGACACCATTCACAACAACACCTAATGCAACAGCAACTTATGACTGCACAGAGGCCAGAACACACCAACCAACAGATCCAACTGACAGTTAGCGAGGACGGCATTGTGACAGTTGTGGAGCCAGCTCCCAACAAATTGGTGGACAAGGAGGAACTACATGAAGCCATTAAAATGCCCAACGATCACACTCTTACCGTGCATCAGTTGCAACAAATTGTTGGACAACAGGTAATAGACAGTGTAGTACGCATAGAACAGGCGACCGGTGAGCCGGCCAACATTTTAGTGACCCATAACCCTGACGGCACCACGTCCATAGAAGCTAGCGCCGCTGACCCACTCATTGTGAAAGATGAGAAAAGTGCAAACAAAATTGAAACTGCGCAGTTCGCTATACCGGCTGAAATAAAGGATATCAAGGGAATTGACTTGAAGAGTGTGGGCGCCATGGGTATGGAAGGCGCAGTAGTAAAGATCTCCGCTGGCGCAGCTGATCATGATCTTCACGCTATGTATAAAGTAAATGTCGAAGATCTCTCGCAGCTACTAGCTTATCATGAGGTGTTCGGAAAACTCAATTCAGAAGGCCAACAACAAGCTAAGGTAATAAGCGAGGTGGAAGTAGAAGCAGGAACAAGTGCAGCAATGTCAGAAGCTGAATCCTCTCCAGGCCACCATTCGTGTGATATATGCGGCAAAATATTCCAGTTTCGATATCAACTCATTGTTCATAGGCGTTATCACGGCGAAAGTAAACCCTTCACGTGTCAAGTTTGCGGTTCCGCCTTTGCCAATCCCGTTGAATTATCGAGACATGGAAAATGCCACCTTGCTGGGGATCCGAATGAAAGACACGCCAAACGGTTGGCGCAAGATAAACCATACGCCTGCACTACTTGCCACAAGACATTCTCCCGAAAAGAACATTTGGACAACCACGTCAGAAGTCATACTGGCGAGACTCCTTACAGATGCGAATTTTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCATGTTCGAAAACACACGGGCGAGACTCCGCACCGCTGCGACATTTGTAAGAAGAGTTTTACAAGGAAGGAACACTTTATGAATCACGTCATGTGGCACACAGGTGAAACGCCGCACCACTGTACAATATGCGGCAAGAAGTATACTAGAAAGGAGCATTTAGTGAACCATTTGAGGTCTCACACAAACGATACTCCGTTTCGATGCGAACTGTGCGGCAAGTCGTTCACAAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGCGAAACTCCGCATCGCTGCGACTTCTGTTCGAAGACATTTACACGAAAAGAGCACCTTTTAAACCATGTTCGTCAACATACCGGTGAATCACCTCATCGGTGTAACTTTTGCAGCAAATCGTTTACGCGTCGAGAACATCTGGTCAACCATGTGAGACAACATACTGGAGAGACTCCGTTCCAGTGTGGATATTGTCCTAAAGCATTTACACGAAAGGACCACTTAGTGAACCATGTCCGTCAGCATACAGGGGAATCACCACACAAGTGCTCGTTCTGCACGAAGTCGTTCACTCGCAAGGAACACCTAACGAACCATGTCCGACAACACACCGGCGAGTCGCCACATCGCTGTACTTACTGCTCCAAGTCCTTCACTAGGAAGGAACATCTTACCAATCATATCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTTCTGTCCGCGGGCCTTCGCGCGCAAGGAGCATCTCAACAACCACATCCGACAACACACGGGCGTCACGCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTCACCAGGAAAGAACACCTTGTTAACCACGTTCGGCAACATACGGGCGAGACTCCGTTCAAGTGTTCGTTCTGTTCGAAGTCGTTCTCTCGTAAGGAACACCTCACAAACCACGTGAATCTACACACTGGGGAAACGCCACACAAATGTCCCTTCTGCACCAAAACATTCTCCAGGAAAGAACATTTGACCAACCATGTCAGAATCCACACGGGCGAGTCTCCGCATCGGTGTGAGTTCTGCCAGAAGACTTTCACACGCAAGGAACACTTGACCAACCACTTGAAGCAACACACCGGCGACACCGCGCATGCGTGTAAGGTCTGCTCAAAACACTTCACTCGGAAAGAACATCTTGTAACGCACATGAGATCGCACAGTTGCGGCGAACGTCCATTCAGTTGCGGGGAGTGCGGTAAATCGTTCCCGTTGAAAGGCAACCTACTGTTCCACGAACGATCACACAATAAAGCCAATGCTAACAATCGGCCATATCGCTGTGATGTCTGCTCCAAGGAGTTCATATGTAAAGGACATTTGGTGACCCATCGGCGAACGCACACGGACGCTGGTGAGGCTGCTCCAACCGGTGAGACGCCCGCAGAGACTGAAGACTGTACTGACTGCAATAAGTGTATCAAAGTTGAACCAGAACGGACTGAGAGGAAACATGAAGTCAGGACTGCAGCTGAAACTCGACCCGTGGAAAGCAATGTTGCACAAACTCAACAAAACACTGCTACTGTGATGCAAATAACTAACCAGCAACAAGTGCGCACGGTGGGTGCGGTAGGTGCGGTGGGCACAGTGGGAGCGGTGGGCACGGTGGGTGCGGTGGGCGCGCCGAACGGTGGCGTGGCGGTGGCGGGCGGCGCCTTCCCGCACGGCGCGACGCAGCACCATGCGGGCGCTACGCTGCAGCACCACCCCGTCACTGTCAACTACTAG
Protein Sequence
MNPEHHNMNTGGGQPPGSSESQNQRVQSTQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQAELVAAQGSSNNAQVSVSAGQATHQQVPTNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMTAQRPEHTNQQIQLTVSEDGIVTVVEPAPNKLVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVISEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHLRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCSKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFARKEHLNNHIRQHTGVTPHSCSYCSKSFTRKEHLVNHVRQHTGETPFKCSFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTAHACKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKANANNRPYRCDVCSKEFICKGHLVTHRRTHTDAGEAAPTGETPAETEDCTDCNKCIKVEPERTERKHEVRTAAETRPVESNVAQTQQNTATVMQITNQQQVRTVGAVGAVGTVGAVGTVGAVGAPNGGVAVAGGAFPHGATQHHAGATLQHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-