Ppyg004140.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000028.1:3394127-3395614[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-09 5.6e-06 26.1 0.0 1 42 18 60 18 63 0.86 2 2 7.2 6.1e+03 -2.8 0.0 13 22 138 148 136 148 0.69
Sequence Information
- Coding Sequence
- ATGCCGAATGAATACAGAAGAAAGCCTACTGGCAGTAATAGAGCTAAGTGGAGTGAAGAAGACTTGGAAAAAGCCATTACTCTTGTAAAAAATAATACATTGAATTTTTTTCAAGCAAGTAAAGAATACAATATTCCTTACAGAACTCTTCGCCGTCGGTTTTTCACAGGTAATACTAAAAAAGGGCGCCTTGGGCCTGATTCTCTGTTTGGAGAAAAAGAAAAGAAGATTGTTAATCATATCAAGAAATTGCAGAGCTGTGGGTTTGCACCTACTATTAATGATTTACGCCAGTTGGCTTTTCAGTTTGCTGAAAGCTTAAATCTTAAACATAATTTTAACCAGGAAGCGGGTAAAGCAGGATACGATTGGGTTAAATCTTTTTTACGTAGAAATTCGGAAGTTTCAATAAGGAAATCGGAAGGAGTGTCTCTACAAAGAGCTAAAGGAATGACAAGAGAGGAAGTTTATAATTTTTTTGATTTATTGGAGTCATTATTTCGGGAACATAATTTTGTTAGTCATCCAAATAAAATTTTTAATATGGATGAAACAGGTTTACAGTTAAATAACAAACCATCTCATGTTCTTGCAATGAAAGGATCGAAATCAGTTCCACAATTAACTTCTGCAGAAAAAGGAGAAAATATTTCTTTAATTTGTTGTTGCTCCGCAGAAGGTAATTTCATACCACCTATTGCAATTTTCAAAGGGAAAAACAAAAAAGACGAGTTTGCTGATGGAATGCCTCCAGGAAGTGAAGTTTATATGAACGAGAAATCTAGTTATATCAACACCGATCTTTTTTTTAAATGGTTGAAAGAACATTTTTATCCTAGGAAACCTCCTGGAAAAGTAATCCTCCTGTTGGATGGACACACTTCACATTGCAACTCAATAGAGATGTTGGAATTTTGTGACAGTAATGATATCATTCTACTTTGTTTTCCGAGTCATACCACTCATTATTTACAACCTTTGGACAGAACATTTTTTAAATCCCTAAAATCTAACTTTAACAATGAATCCAATGCATGGATTCGTAACAACCCAACCAGAAAGTTAGGACGTCTTCAGTTTGGAAATTTATTGGGCAAAGCATGGGGCAAATCGGCTAACCAAAATAATGGTGCGTCAGGATTTCGCGCTTGCGGATTATTTCCACCCGACAGAAATGCAATTCCTGAATATGCTTTTATATCTGATGCTGCCTATACAAGCGTGTGCTCAACTGATGGTGTTTCTGAAGAAAATGTGGCTCACTCAATTAACAGTGCTAATACTGAAAATCCAGTTTCTTCGTCCAGTGGAGAAGAAAATGTAGAAAATCAATCTACTCCTTTGAAATTAGAGGGTATAAAGAAACAAACTAGTGACAATGACGTGGAAACTCCTTCAAATATCTTAGAAAAAAATAAAAAAATGCCATCGATTCGCAAAGAAGATTTTCGACCTTATTGCAATTTGAACATTCGAACAAGATTTTAA
- Protein Sequence
- MPNEYRRKPTGSNRAKWSEEDLEKAITLVKNNTLNFFQASKEYNIPYRTLRRRFFTGNTKKGRLGPDSLFGEKEKKIVNHIKKLQSCGFAPTINDLRQLAFQFAESLNLKHNFNQEAGKAGYDWVKSFLRRNSEVSIRKSEGVSLQRAKGMTREEVYNFFDLLESLFREHNFVSHPNKIFNMDETGLQLNNKPSHVLAMKGSKSVPQLTSAEKGENISLICCCSAEGNFIPPIAIFKGKNKKDEFADGMPPGSEVYMNEKSSYINTDLFFKWLKEHFYPRKPPGKVILLLDGHTSHCNSIEMLEFCDSNDIILLCFPSHTTHYLQPLDRTFFKSLKSNFNNESNAWIRNNPTRKLGRLQFGNLLGKAWGKSANQNNGASGFRACGLFPPDRNAIPEYAFISDAAYTSVCSTDGVSEENVAHSINSANTENPVSSSSGEENVENQSTPLKLEGIKKQTSDNDVETPSNILEKNKKMPSIRKEDFRPYCNLNIRTRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -