Ppyg017392.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000190.1:1551960-1553892[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-05 0.018 14.9 0.0 2 41 20 60 19 61 0.93 2 2 1.9e-06 0.0016 18.3 0.0 2 41 146 186 145 187 0.92
Sequence Information
- Coding Sequence
- ATGTCAAAAACAAGGATACGAAGAAAAGCTCATGCTCGAAAATATGTGAATTACTCAAATGAAATGCTGGCAATAGCAGTAGATCTTGTTAGGAAAAAGGTCGTGTCTTCGTACGCTGCCGAAAAACAATTTGGAATTCCTCGGCGAACAATTGTGGATAAAATTAAAAATACGCATCCTAATCCTATAGGTGGACCAACAGAGTTATCATATGAAGATGAAAAATACATAGCCAACATATATAATACAGCTGCTAAATCTGGTAGTCCATTAACATTGAAAGAATTACGCAATATTGCGTTTATCTACCTTAAAAAAAATGGGAAAACCAAACTGTTCAATGGAAAAATGCCTGGAGAGCATTGGGCCCATTGGCTAAAAACAAAGAAGCAGAAACGAAGGAAACCTGATGCTCGAAAGTATAGGAATTACTCAAACGAGAAACTAAAAATAGCGGCAGATCTTGTTAGAAAAAAAGCAATGACTTCGAGAGCCGCAGAAATACAGTTTGGGATTCCTCGTCGAACAATTGTGAATAAAGCTAAAAATTTGCACACTAATCCTGCAGGTGGACAAACACAGTTAACATTTGATGAAGAAAAGCACATCGCAAATATTGCTAATAAGGCTGCCGAGTCTGGGAATCCATTATCATTGCTAGATTTACGCATTGTTGTACATAATTACCTTAAAAAAAACGGAAAAACTAATCTGTTCCATGGAAAAATGCCTGGAAAGTATTGGGCTAGTAGTTTTTTAAATCGACATAGCATTTCACATAAACCCACCCAAAACAAAAAAAAACGAGAACCAAAAACAGAACTGGAACTGAATAATTATTGTAATAATTTAGAATTGTTATTAAAAGATGTCTCCTCTAGCAATTAA
- Protein Sequence
- MSKTRIRRKAHARKYVNYSNEMLAIAVDLVRKKVVSSYAAEKQFGIPRRTIVDKIKNTHPNPIGGPTELSYEDEKYIANIYNTAAKSGSPLTLKELRNIAFIYLKKNGKTKLFNGKMPGEHWAHWLKTKKQKRRKPDARKYRNYSNEKLKIAADLVRKKAMTSRAAEIQFGIPRRTIVNKAKNLHTNPAGGQTQLTFDEEKHIANIANKAAESGNPLSLLDLRIVVHNYLKKNGKTNLFHGKMPGKYWASSFLNRHSISHKPTQNKKKREPKTELELNNYCNNLELLLKDVSSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -