Ppyg017389.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000190.1:1533634-1541037[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4e-15 3.4e-12 46.1 0.0 2 40 24 61 23 65 0.91 2 5 4.5e-15 3.8e-12 45.9 0.0 2 38 137 172 136 177 0.92 3 5 9.9e-14 8.4e-11 41.6 0.0 2 38 250 285 249 290 0.92 4 5 2.1e-15 1.8e-12 47.0 0.0 2 42 363 403 362 405 0.91 5 5 3.5e-14 2.9e-11 43.0 0.0 2 42 476 516 475 519 0.89
Sequence Information
- Coding Sequence
- ATGGATTTACGAGTATTATTTGTAGATCCGTTATCCAAGTCTAGGAAAACCAAACGTGCAACGTGGTCTGAACATAAGTTGGTAAAGGCAGTTGAAGCTGTTCGCAACGGGCTATCTACATGGAAAGCAGCAAAAAAATATGGCATTCCTAGAACTACCCTGAGAGATCACGTACGAAGTGGAAACCTCAAAAAGATTTTGGGAAGACAAACTACACTGACTTGGGAACAAGAAAGAGAACTTGTTAATCGTATAAAAAATAATGCTGATTTAAAAAAACCTCTTAAGTCAAAAGAGATTCGAATTCAGGCATTTGATTACTGCCAGGAATTAAATATTCGACATACATTTAATAAGAAAACTGATCCGATATCCAAGTCTAGGAAAACGAAACGTGCAACGTGGTCTGAACATAAGTTGGTAAAGGCAGTTGAAGCTGTTCGCAACGGGCTATCTACATGTAAAGCAGCAAAAAAATATGGCATTCCTAGAACTACCGTGAGAAATCATGTACAAAGTGGAAAACTCAAAAAGATTTTGGGAAGACAAACTACACTGACTTGGGAACAAGAAAGAGAACTTGTTAATCGTATAAAAAATAAAGCTGGTTTAAAAAAAGCTCTTACGTCAAAAGAAATGCGAATTCAGGCATTTGATTACTGCCAGGAATTAAATATTCCCAATGTATTCAATAAGAAAACTGATCCGTTATCCAAGTCTAGGAAAACCAAACGTGCAACATGGTCTGAACATAAGTTAGTAAAGGCAGTTGAAGCTGTTCGCAACGGGCTATCTACATGGAAAGCAGCAAAAAAATATGGCATTCCTAGAACTACCGTGAGAAATCACGTACAAAGTGGAAAACTCAAAAAGATTTTGGGAAGACAATCCACACTGACTCAAGAACAAGAAATAGAACTTGTTAGCCGTTTAAAAAATAAAGCTGGTTTAAAAAAACCTCTTACATCAAAAGAGATCCGAATTCAGGCATTTGATTACTGCCAGGAATTAAATATTCCACATACATTTAATAAGAAAACTGATCCGTTATCCATGTCTCGGAAAGCCAAATATGGCATGTGGTCTGAACATAAGTTAGTAAAGGCAGTTGAAGCTGTTCGCAACGGGCTATCTACATGGAAAGCAGCAGAAAAATATGGCATTCCAAGAAGTACCTTGAGAGATCACGTACTAAGAGGAAACCTCAAAAAGAGTTTTGGAAAAAAACCCACACTGACCCTAGGACAAGAAAGAGAACTTGTCAATCGTATAAAAAATAAAGCTGATTTAAAAAAACCTCTTAAGTCAAAACAAATTCGGCTTCTGGCATATAAATATTGCCAGGAATTAAATATTCCCAATGTATTCAATAAGAAAACTGATCCGTTATCCATGTCTCGGAAAGCCAAATATGGCATGTGGTCTGAACATAAGTTAGTAAAGGCAGTTGAAGCTGTTCACAGTGGGTTATCCACATGGAAAGCAGCAGCAAAATATGGCATTCCAAGAAGTACCTTGAGAAATCACGTACTAAGAGGAAACCTCAAAAAGAGTTTGGGAAAAAAACCCACACTGACCCTAGGACAAGAAAGAGAACTTGTTAATCGTATAAAAAATAAAGCTGATTTAAAAAAACCTCTTAAGCCAAAACAAATTCGGCTTCAGGCATATAAATATTGCCAGGAATTAAATATTCCCAATGTATTCAATAAGAAAACTGGTGAGGCTGGAAAGAGTTGGCTGAGATCTTTTTTGAGGAGAAATCCCGACTTATTATCTTAA
- Protein Sequence
- MDLRVLFVDPLSKSRKTKRATWSEHKLVKAVEAVRNGLSTWKAAKKYGIPRTTLRDHVRSGNLKKILGRQTTLTWEQERELVNRIKNNADLKKPLKSKEIRIQAFDYCQELNIRHTFNKKTDPISKSRKTKRATWSEHKLVKAVEAVRNGLSTCKAAKKYGIPRTTVRNHVQSGKLKKILGRQTTLTWEQERELVNRIKNKAGLKKALTSKEMRIQAFDYCQELNIPNVFNKKTDPLSKSRKTKRATWSEHKLVKAVEAVRNGLSTWKAAKKYGIPRTTVRNHVQSGKLKKILGRQSTLTQEQEIELVSRLKNKAGLKKPLTSKEIRIQAFDYCQELNIPHTFNKKTDPLSMSRKAKYGMWSEHKLVKAVEAVRNGLSTWKAAEKYGIPRSTLRDHVLRGNLKKSFGKKPTLTLGQERELVNRIKNKADLKKPLKSKQIRLLAYKYCQELNIPNVFNKKTDPLSMSRKAKYGMWSEHKLVKAVEAVHSGLSTWKAAAKYGIPRSTLRNHVLRGNLKKSLGKKPTLTLGQERELVNRIKNKADLKKPLKPKQIRLQAYKYCQELNIPNVFNKKTGEAGKSWLRSFLRRNPDLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -