Pazu007763.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000185.1:3533391-3538237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 0.7 10.7 1.1 1 23 203 226 203 226 0.93 2 10 0.00017 0.0092 16.6 3.9 1 23 266 289 266 289 0.95 3 10 0.19 10 7.0 2.2 1 23 295 318 295 318 0.97 4 10 0.00031 0.017 15.8 0.8 2 23 349 370 348 370 0.96 5 10 0.01 0.56 11.0 0.5 1 23 447 470 447 470 0.96 6 10 0.11 6.2 7.7 0.6 2 23 478 499 477 499 0.97 7 10 0.094 5.1 8.0 1.9 2 20 636 654 635 657 0.92 8 10 6 3.2e+02 2.3 0.2 15 23 661 669 660 669 0.91 9 10 0.00066 0.036 14.8 4.4 2 23 682 705 681 705 0.88 10 10 1.7 90 4.1 2.2 1 21 711 731 711 735 0.79
Sequence Information
- Coding Sequence
- ATGTCGAGTGATTTTAAGAATGAATGTTTTATAAATGGTGTGCGTTATAGATGTCGCACTTGCTTTGATCCGGGACGTTCGCTATATTCCCTTAAAGATGAGTGCAGCAATTCAAAAACCTGGCGTGATTTATTTAGAGAAGTTGCTCATTTACAGACAAAAGAGGACGAGTTACTTCCAAATACTGTGTGCTCCAAATGTTTGGACAAACTTATAACATTTTACGATTTTATACTTCAAATCAATAATGTGAATAAAAAATACATGGAGCTATTGGCAATTTCGAATGATCCTCTAAATGTGGAAAGTGCCAGGAAAAATGATACTTTTAGCGACTGCTTGTCTGAATTTGAAATTGATATGCCAATGGAAGAGTTTATATCAGAAATTAAATTGGAAGAAGAGCTAATCGCACCGTATGATATAGTTTTAAGTAGCAACAATAAAGATGACCATAATACTTTTGATGAGGATATAAAATTAACTCCATTGCAATTGGAAGAAAACAAAGGTTCTATAGATGATCAAACCAATCAAAGTTATAACAATAACTACAATGATGACTCCAATAACTTGTATGAAAAAATCATAAAAATTCACAATCGTTTTGCATGCCCGAAGTGTAAGAAAACATTTGCAGCCGCAGCGTCTTGTCGACGACACTTAGATAAGATACACTCTCAACAAACTAGTGTATCCAGCTCCTCGTCCTCCGATGAATACGATAACATGCCTACCAATAGCCAAACTAATGAAGAGTCGGATTATGGCGAAATCGAAAAGGTGGACAATCGTTTTGCGTGCCCTATATGTAAAAAAACATTTACTTTAAAAAGTAATTGTCGTCGGCATATACGCTTTTTACATTTAAAACAACGCAGATTTTCTTGTGGATTTTGTGAAATAACTTTCATATGCAGAGACTATTTGTATGCGCATCTTAAACGTATGCATCCAGGGGAAACAATTGATTCGAACAATAAGGTTATTCAACGATTATTTGGAGATCGCTTATACAATAAACCCACAACTTGGCGTCATGTAGAATGTAAATTGTGTTCAACCACTTTTACTACAACTAAAGAACTTCGTGAGCACTTAGAAAGCCACAGTCATTTACAGACTCTTCATAACTTGAAAATGAGCGATCAAATTGTCCAGCATTTGTTCGCAAATATTAAAGATTTAAATATTGTCAAGGAAAGTATACTCAAAGATATTTCAGAGAAGAATTTTTTCAAATACTACTCAGTTTTAAATAATTATTGTTATGAGATGTCTATTAGTGATACAGAAGCCGAAGATTTGGTAGATAAAACTACAGAGCGTACCAGCAAATATAAATGTGAATTGTGTGCTGAAGAGTTTTCGTTTAAATACCAAGTTTTCTTACACTTAAAAGAAGCGCATCCTAAGGAGGAAATTCCTCTTAAATGTAAACGATGTAAATTAGAATTTGTTTCTATTGATATTTATGAAAAACACATACAAACACACTGTCGTAATAAGCATAAAGTTTTATATTGTGAACATTGTCCGGGCACGTTCATTTGGCCAGAAAATAAGAAAAATCACAATTGTCCATCGAAAATTCCGGAGACTTCAGTAGTCACTGCTAAAAATCAATTAAAATCTAATGATGGTGAAGTTGTAGAAAAGACCAAAAATGCAGAACAATTACAGCTACAAAGTAGTAATAAAAATCACAATTCAATATTGAACGTTTCAGAGACATCGCAGGTCGCTGTTGAAGATCAAATAAAAACGAATATGCCCAAATATTCTTCAACCATTTCGGAGACTACACCCTTCTCTGATGTGGATCAACTAAAAACGAACTATAAAAGCCAAGAACATCTGAAGCAAAATGATAATGACAGTGTTACTTCAACAGAGACTATAATACGTTGTGCTCTTTGTGCCCTTTCATTTAAAAAACTAAAACATTTGCACCAGCACATGCCGGtgcacgccgatgccgatttacaggaacatcaacgaacacatacaggcgaacgtccctacaaatgtgagagaccatacaagtgtaactgtacattttgtgagaaagcatttaataaatctgaaaatttcagactacatttaagacttcatacaggcgaaaaaccctatagatgcgacgtatgcagtaaagcctttttatgtgcccgatatctgaaaaatcatcgtattaaaaagggacattatgaagaaaaaGATTGA
- Protein Sequence
- MSSDFKNECFINGVRYRCRTCFDPGRSLYSLKDECSNSKTWRDLFREVAHLQTKEDELLPNTVCSKCLDKLITFYDFILQINNVNKKYMELLAISNDPLNVESARKNDTFSDCLSEFEIDMPMEEFISEIKLEEELIAPYDIVLSSNNKDDHNTFDEDIKLTPLQLEENKGSIDDQTNQSYNNNYNDDSNNLYEKIIKIHNRFACPKCKKTFAAAASCRRHLDKIHSQQTSVSSSSSSDEYDNMPTNSQTNEESDYGEIEKVDNRFACPICKKTFTLKSNCRRHIRFLHLKQRRFSCGFCEITFICRDYLYAHLKRMHPGETIDSNNKVIQRLFGDRLYNKPTTWRHVECKLCSTTFTTTKELREHLESHSHLQTLHNLKMSDQIVQHLFANIKDLNIVKESILKDISEKNFFKYYSVLNNYCYEMSISDTEAEDLVDKTTERTSKYKCELCAEEFSFKYQVFLHLKEAHPKEEIPLKCKRCKLEFVSIDIYEKHIQTHCRNKHKVLYCEHCPGTFIWPENKKNHNCPSKIPETSVVTAKNQLKSNDGEVVEKTKNAEQLQLQSSNKNHNSILNVSETSQVAVEDQIKTNMPKYSSTISETTPFSDVDQLKTNYKSQEHLKQNDNDSVTSTETIIRCALCALSFKKLKHLHQHMPVHADADLQEHQRTHTGERPYKCERPYKCNCTFCEKAFNKSENFRLHLRLHTGEKPYRCDVCSKAFLCARYLKNHRIKKGHYEEKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -