Pazu006221.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000153.1:1831102-1833080[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.67 36 5.3 0.1 2 23 292 314 291 314 0.92 2 9 0.0033 0.18 12.6 0.2 1 23 346 369 346 369 0.97 3 9 0.00024 0.013 16.1 2.7 1 23 378 400 378 400 0.96 4 9 4.7e-05 0.0026 18.4 0.1 1 23 408 431 408 431 0.94 5 9 0.0003 0.016 15.9 0.1 3 23 439 459 438 459 0.97 6 9 0.062 3.4 8.6 0.2 3 23 469 490 467 490 0.93 7 9 0.0001 0.0054 17.4 1.3 1 23 498 521 498 521 0.96 8 9 4.3e-07 2.3e-05 24.8 1.2 1 23 527 549 527 549 0.98 9 9 3.9e-06 0.00021 21.8 1.3 1 23 555 578 555 578 0.98
Sequence Information
- Coding Sequence
- ATGGAGTCATGTTTGCTGTGTTTAGAAATAAATAAAGATATTTTGGATTCCATTAAGGCAAACTCCTTACAATGGCAGGAGCTAAACATAGCGAAAGTAATAGAGAAACATTTTTGGCCGCTGAACACCATACAACCATGTTCCTGGATATGTTTGACATGCTGGCAAGAGGTAGACGATTTTCACAAATTCTATATGCGCATAGAAGAGGCTCATATGAATTTTGGAAAAATAAAAGTTGAGGATGGTGCGACAACGGTGGTGGAATGTAAAGAGGAATTAACAATACAAAAACTTAAAATAAAAGATAATAACGATGAGACGGATAAAGATAATATTGCATATTGTTTTCTAGAGCCAGAAATTTTAATTGACCAATCTCAAACACAAGATTTGGTTGAGCAGGAAATATTAATAGGCCCAGCCCCTGCCAACGAATTGGTTGTTGTCAAAGATGCACCAACAGTAGAGACTTTGGATGAAATTGACTTGGATGATATGCCTCTAAAGCAAGCTTGTAAACGTTTAAGACTACAAAATGAAATGGCAAGTGAAGATCCCCTGGAGAAATCAAAGAAATCTAAAATTACTAAATCCAAGAATAGAAAAACCAACAAGACAAAAGCTACAGCAATCAAACTAACAGAAGAAAACAAAACAACAGAATCTACTGTTAAAGAAGAACCTGAGGATTTAAATGATCATAACGATGAATCTGATAGTGGTACGGACAATGATGCCACTGATATTAATTATCAGCCAGATAAAGATGCCTCTGAAACAATAGAAAGCAAAAGACGTAAGGCTTATAGTAAACATCGCACAAATCGTAAAGAAAACGACAAGTTTATAGCCGAGCACTTTAAACAGATGTATTGTGATCTTTGCCAAGTTCCGTTTgaagattttcccgccatgcagaaacattttaacgagacacataaacaacgaggctatgtggtatgctgcaagagaaagttttttgatcgtacacgtttagtggaccaccttcattgtcatttgaatcccgatcatttcaaatgtgccgagtgtggtaaagccatgtccgatcgtattagctttgatagtcatatgctgcgtgttcataagcctagcgaagtggttaagcaacactgttgtgatgtgtgtggtaaatcttttacagaagcctatgtcttaaggatacacaaattaacccatttgccggaagaggagaaaaagtttccctgcagtgattgcggtaaaaaTTATGGCAGTCCTtatctgttaaaccaacataggcaagctgtacatcttaaacgatttgttaaaatctgttatatatgcggcaaagctataaattcaagtgccgagttcaaagtacacatgaacaagcatgaaggtattcccgctcccgttatcaactgtgatgtatgtggcttacgtctgaccagtgaaagaggtctaaagctacataaagaatcccaacatcctgtaggtggcaaacaacaacatcattgtcccatctgtccgaaaatatctcccactctgaaggccctaaaaaaacatataaatactatgcatgaaaaaggatatgatcataagtgtagcatttgtgaaaaagcttttaagagatcagaagctttaaaggaacatatggccacacacactggtaccactttgtacacctgcccttggtgtcccaaaacgttcaattccaatggtaatatgcatgctcatcgtaaaaagatccatcccaaagaatgggaagagtcaaaactacaaaaGTATTCGGGACGTAGACCACCAGAAATTTAA
- Protein Sequence
- MESCLLCLEINKDILDSIKANSLQWQELNIAKVIEKHFWPLNTIQPCSWICLTCWQEVDDFHKFYMRIEEAHMNFGKIKVEDGATTVVECKEELTIQKLKIKDNNDETDKDNIAYCFLEPEILIDQSQTQDLVEQEILIGPAPANELVVVKDAPTVETLDEIDLDDMPLKQACKRLRLQNEMASEDPLEKSKKSKITKSKNRKTNKTKATAIKLTEENKTTESTVKEEPEDLNDHNDESDSGTDNDATDINYQPDKDASETIESKRRKAYSKHRTNRKENDKFIAEHFKQMYCDLCQVPFEDFPAMQKHFNETHKQRGYVVCCKRKFFDRTRLVDHLHCHLNPDHFKCAECGKAMSDRISFDSHMLRVHKPSEVVKQHCCDVCGKSFTEAYVLRIHKLTHLPEEEKKFPCSDCGKNYGSPYLLNQHRQAVHLKRFVKICYICGKAINSSAEFKVHMNKHEGIPAPVINCDVCGLRLTSERGLKLHKESQHPVGGKQQHHCPICPKISPTLKALKKHINTMHEKGYDHKCSICEKAFKRSEALKEHMATHTGTTLYTCPWCPKTFNSNGNMHAHRKKIHPKEWEESKLQKYSGRRPPEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045581;
- 90% Identity
- iTF_01261277;
- 80% Identity
- -