Basic Information

Insect: Protocalliphora azurea
Gene Symbol: -
Assembly: GCA_932273785.1
Location: CAKNZW010000038.1:1432242-1436679[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.9e-06 0.00016 22.2 0.8 2 23 211 233 210 233 0.97

2 11 0.00097 0.053 14.3 2.1 1 23 254 277 254 277 0.96

3 11 0.2 11 7.0 0.8 2 23 295 317 294 317 0.95

4 11 9.1 4.9e+02 1.8 5.6 1 23 324 347 324 347 0.95

5 11 0.0023 0.12 13.1 0.6 2 23 448 470 448 470 0.96

6 11 4e-06 0.00022 21.7 1.5 3 23 479 500 478 500 0.97

7 11 0.53 29 5.6 4.0 1 23 520 542 520 543 0.95

8 11 0.00015 0.0082 16.8 0.6 1 23 549 571 549 571 0.93

9 11 6.9e-07 3.7e-05 24.2 2.4 1 23 577 599 577 599 0.99

10 11 1.6e-08 8.7e-07 29.3 2.8 1 23 605 627 605 627 0.99

11 11 0.00011 0.006 17.2 0.1 2 21 634 653 633 657 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.9e-06	0.00016	22.2	0.8	2	23	211	233	210	233	0.97
2	11	0.00097	0.053	14.3	2.1	1	23	254	277	254	277	0.96
3	11	0.2	11	7.0	0.8	2	23	295	317	294	317	0.95
4	11	9.1	4.9e+02	1.8	5.6	1	23	324	347	324	347	0.95
5	11	0.0023	0.12	13.1	0.6	2	23	448	470	448	470	0.96
6	11	4e-06	0.00022	21.7	1.5	3	23	479	500	478	500	0.97
7	11	0.53	29	5.6	4.0	1	23	520	542	520	543	0.95
8	11	0.00015	0.0082	16.8	0.6	1	23	549	571	549	571	0.93
9	11	6.9e-07	3.7e-05	24.2	2.4	1	23	577	599	577	599	0.99
10	11	1.6e-08	8.7e-07	29.3	2.8	1	23	605	627	605	627	0.99
11	11	0.00011	0.006	17.2	0.1	2	21	634	653	633	657	0.89

Sequence Information

Coding Sequence: ATGGATGAAAATAAAGTTCAAAAGTGTAGAACATGTCTTAAGAATAGTACAAAAATCTTTCCTCTCACCAAACAGGCCAGAGGTTGTAGTCCTAAGACAACCTACGCTCAAATACTAAAGGAATATGCCAAATTAGAGAGCTCTGTCGATTATGAGCATTTAATGCCTCAATATTTATGCTTTTTATGTTGTCGTGAGCTAAGGAACACGTACAATTTCATTCGCCAAGCCCAGTATTGCAATATTAAACTTATTAATGTTATTTCCAAACAATTAGATTGTTTGCAAGAAAGAACAATTGATTTGCCTCAAAATCTAAATGAATTGGAAGAGAAATCTATTGATATAAAAATGGAAAAGGAGAGTGCGGAATGCCTAACAAAAGAACAAAAAATACAGGATACTACAAAAGATTTAATGAATATTGGAAAGCCAAATGAAATTTTGAAATGTAAAGAATTGGTTGAATCATTAGAAACAAATGAATTATCTATTGAAAGTGATGATAAAGAAATGGATATTGATAATGATCAACAAAATGATTTACCTTCGGAATATTCTACCACTTCCGATACTAACACAAATTTAATTGATAATGATGAACAGCATACGGATTCTACCTTAGATACAGTGTGTCCCATATGCAATAAAACTATGAGCCGACGTGATAATTTATTAACACATATGCGTACTCAGCATGATATTGAAATGCCTAGTAAATTGTTAAACCAACAAAATAAATCACTGACTAAAGATCTATTTGAGTGTAAAATATGTCCCAGTAAATATACTAATAAATATTCGTTGTTGTATCATTTAAAAAATAAACATAATATTAATGATGAGAAAAAAGGCAAAGATAAACCAAAAGATAAAATTATTAAATGTCGTTCATGTGATTATACAGCTAGAACGTATGCGGCTTTAAACTATCACAATCGTTCGAAACATGGCAGTGAAGAAGATAAATTTAAATGTAAATTTTGTTCGTACATGTGTTTAAAGAAATTTGATCTATTAACGCATGTGAAAAATTCACATAAAGCACTGATTAAAACTCTTAAAGCTGAGGCTGAAAATCAACAAGAACAAGGAGAAACTCTAAATCAAGGTACATCTACATTTGTACTACTACAAGAAGACGAACATTCCCTAGATAAAAATGAAGATTCCTCCTCTAGTGATGATAATATTCCTTTGGCTCAAAGAGTTACTAAATCACATTCAACCTCTCAAAGGGATAGAGATAAGGAAGAATTTAGTGATGAAGAGTTTATAAGAAATATTTTAAATATTAAAAAGAGGCAGCCTAAATCTCAATCAAGCAAATCTTTAGCTAGACGATGTGATGAATGTGGCAATATCTATAAAGACTATAAAGCTCTTTATGCCCATCAACGACATGTACACATTAGCGAAGATAAATATAGTTTATGTCCACATTGTGGTAAAAAATATAAACGAAAAACCGATCTTAGAATACATATTGAAAAGGCTCATATCACCAAAAATCACACGGATTCAACAAAGCCACCAGCAAAAATTAGGGAGAAACGTTTTATGTGCACAGAATGTTCTTAcgtttgcaccaccataactattttaaatattcatagaaatcgtcatcataccggcgaaaaaccctataaatgtgatatatgctttaaatcgtttatagttccatatgatttgaaaattcacagttatttacataccggtgaaagaccttataaatgcccgatatgttccaaaggttttcgagacaattctcatatgattaaacacaaacgtatacatagtagtgaacggccttataagtgtaaagaatgtggtaaaagttttactcaatcgtataatttaTCGGTGCACAAACGTACACATTTGAAGGAGAAAAAATTGAACTGCGCAATATGTGGTAAAGTATTTGAGAATAGATCGCTTTTGAATCTACATCGTATAAATGAAAATCACCATGATGAATTTATATGA
Protein Sequence: MDENKVQKCRTCLKNSTKIFPLTKQARGCSPKTTYAQILKEYAKLESSVDYEHLMPQYLCFLCCRELRNTYNFIRQAQYCNIKLINVISKQLDCLQERTIDLPQNLNELEEKSIDIKMEKESAECLTKEQKIQDTTKDLMNIGKPNEILKCKELVESLETNELSIESDDKEMDIDNDQQNDLPSEYSTTSDTNTNLIDNDEQHTDSTLDTVCPICNKTMSRRDNLLTHMRTQHDIEMPSKLLNQQNKSLTKDLFECKICPSKYTNKYSLLYHLKNKHNINDEKKGKDKPKDKIIKCRSCDYTARTYAALNYHNRSKHGSEEDKFKCKFCSYMCLKKFDLLTHVKNSHKALIKTLKAEAENQQEQGETLNQGTSTFVLLQEDEHSLDKNEDSSSSDDNIPLAQRVTKSHSTSQRDRDKEEFSDEEFIRNILNIKKRQPKSQSSKSLARRCDECGNIYKDYKALYAHQRHVHISEDKYSLCPHCGKKYKRKTDLRIHIEKAHITKNHTDSTKPPAKIREKRFMCTECSYVCTTITILNIHRNRHHTGEKPYKCDICFKSFIVPYDLKIHSYLHTGERPYKCPICSKGFRDNSHMIKHKRIHSSERPYKCKECGKSFTQSYNLSVHKRTHLKEKKLNCAICGKVFENRSLLNLHRINENHHDEFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01194598; iTF_01261234;
90% Identity: -
80% Identity: -