Basic Information

Insect: Protocalliphora azurea
Gene Symbol: -
Assembly: GCA_932273785.1
Location: CAKNZW010000051.1:2525501-2528027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.4e-06 0.00046 20.7 3.1 1 23 208 230 208 230 0.98

2 10 1.3e-05 0.00072 20.1 0.7 1 20 240 259 240 261 0.96

3 10 0.00013 0.0071 17.0 2.4 1 23 269 291 269 291 0.98

4 10 1.2e-06 6.7e-05 23.4 1.3 1 23 296 318 296 318 0.98

5 10 0.00011 0.0057 17.3 0.8 1 23 328 350 328 350 0.97

6 10 9.2e-07 5e-05 23.8 1.4 1 23 357 379 357 379 0.98

7 10 2.9e-06 0.00015 22.2 2.9 3 23 386 406 384 406 0.96

8 10 7.2e-06 0.00039 21.0 2.9 1 23 412 434 412 434 0.98

9 10 0.0017 0.094 13.5 0.1 2 23 440 461 439 461 0.95

10 10 0.00044 0.024 15.3 1.0 1 23 466 489 466 489 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.4e-06	0.00046	20.7	3.1	1	23	208	230	208	230	0.98
2	10	1.3e-05	0.00072	20.1	0.7	1	20	240	259	240	261	0.96
3	10	0.00013	0.0071	17.0	2.4	1	23	269	291	269	291	0.98
4	10	1.2e-06	6.7e-05	23.4	1.3	1	23	296	318	296	318	0.98
5	10	0.00011	0.0057	17.3	0.8	1	23	328	350	328	350	0.97
6	10	9.2e-07	5e-05	23.8	1.4	1	23	357	379	357	379	0.98
7	10	2.9e-06	0.00015	22.2	2.9	3	23	386	406	384	406	0.96
8	10	7.2e-06	0.00039	21.0	2.9	1	23	412	434	412	434	0.98
9	10	0.0017	0.094	13.5	0.1	2	23	440	461	439	461	0.95
10	10	0.00044	0.024	15.3	1.0	1	23	466	489	466	489	0.96

Sequence Information

Coding Sequence: ATGGAAAGCGTTTTGCCAATCTGTCGTGTCTGTTTAAATGCCTCCAATGAAACCATCGATTTACAAACATGTTTCAAATATCGTGGAGAACAACAAACCGATAGTATCACTGCAGAAGCAAATGAAATAAATTACCTAGAATGTTTGCGTCGTTGTACAAATCTTCCGATTCAGGAATATGATGATGGTCCACAGTATTTGTGTACGGGATGTGAATCCGAATTGCAGGTGGTTTATAAATTTCTACAGAAGGCACAAAGCTCTCAGGCAATATTAGAAGATAATTGGCTGAAGGCACAACAAACGCCGAATAAAGAAACCATAGATCATGCGGAAATTGTAATTGAAACATTTGAAGAGGAGGAAACTGTTGAGGAAGAAATTGTCGAGGAGCAAGATAATGAATACGAACATTTAGTTAAAACAGAAGAACCAACAATAGATTACTATGAAGAAGATAAGCAACAAGATGAATCCTTTGAAATGAGTGAAGACAATATTTATGTTGAGACAGAAGAAGTTATCAGTGATTTTGAACTATATTCTCAAGAAAATCAGTTGTTAACAGAAGATTCGAATACTTCACAGGAAAATACAACAAAGACTTTTATTGCTAAGAATCATAAATGTCATATTTGTGATCGCGTCTATACAACACCCAACCTTTTAAAAGTTCATCTGAATTATCATAAACGCAAAGGTGAAGAAAATAAAGCATACCAATGTAAAATGTGTGGGGAACACTTTTCTTCACAACGTTATTTAAATCAACATTTAGCCGAGGAAATCGACTGTCAAGTAACCCATAAGTGTGAATTTTGCGATAAGGAATATATTACTAAAATTGCCTTAAATAGTCATAAACGCATGCATCAGGGACAATTATTTACCTGTGAAGAATGTGGCAAACAATTTAAAGGCAGTTATGAGTTAAAAGTTCATCAAAGATTTCACAAACGTGAGAAAGAAGTGCAGGTAATTCACAAATGTGAAATATGCGCTAAAGAATATACATCAGCACGTTATTTAAATCAACATATGGTTGTGCATCTCGGTGATAGGGAAACATACAAATGTAATTATTGTGATAAGGTATACATTTCTAAAACTGCACTTAATAATCACACACGTTTGCACGAAGGGCAAACATTAGATTGTAGTGTGTGTGGTAAACGTTTTACAAGAAATTGTGAATTGAAAATTCATATGAGATTTCACAATCGTGAACATCCTTACGAATGTACATTGTGTGACAAGAAATTTACCATTAAGGGACATTTGAAAACTCATATGTTGCAACATCAGGGCGTTAAATGGGAATGTGGAGAGTGTGGTAAATTGTTTGGATCTTCGAAGGCATTAAATGAGCATTCCTATACACACAGTGAAATGCCATATCCTTGTGATTTTTGTAGCAAAGCTTTTCCAACAAAACAAAAATACAAAATGCATTTGGAAAAAGTGCATTCCGCTGATAACGAAGGTATTGAACTAATAAAAATTGAAAGTCTAGCAGATGATCAAAATTCAAAGAAGCATAAAAATTTCACATATTATGAAGTTATCGAAGAACCGGAAGACAATGAACAGTAA
Protein Sequence: MESVLPICRVCLNASNETIDLQTCFKYRGEQQTDSITAEANEINYLECLRRCTNLPIQEYDDGPQYLCTGCESELQVVYKFLQKAQSSQAILEDNWLKAQQTPNKETIDHAEIVIETFEEEETVEEEIVEEQDNEYEHLVKTEEPTIDYYEEDKQQDESFEMSEDNIYVETEEVISDFELYSQENQLLTEDSNTSQENTTKTFIAKNHKCHICDRVYTTPNLLKVHLNYHKRKGEENKAYQCKMCGEHFSSQRYLNQHLAEEIDCQVTHKCEFCDKEYITKIALNSHKRMHQGQLFTCEECGKQFKGSYELKVHQRFHKREKEVQVIHKCEICAKEYTSARYLNQHMVVHLGDRETYKCNYCDKVYISKTALNNHTRLHEGQTLDCSVCGKRFTRNCELKIHMRFHNREHPYECTLCDKKFTIKGHLKTHMLQHQGVKWECGECGKLFGSSKALNEHSYTHSEMPYPCDFCSKAFPTKQKYKMHLEKVHSADNEGIELIKIESLADDQNSKKHKNFTYYEVIEEPEDNEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261202;
90% Identity: iTF_01261202;
80% Identity: -