Pazu018079.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000774.1:98514-100470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.017 15.8 2.3 2 20 206 224 206 227 0.92 2 12 8.7e-06 0.00047 20.7 0.7 1 23 233 256 233 256 0.95 3 12 0.00031 0.017 15.8 0.0 1 23 268 290 268 290 0.96 4 12 0.11 5.9 7.8 0.8 2 21 296 315 295 318 0.94 5 12 2.1e-05 0.0012 19.5 0.1 1 23 324 346 324 346 0.98 6 12 6.4e-05 0.0035 18.0 1.9 1 23 352 374 352 374 0.98 7 12 0.0027 0.15 12.8 4.0 1 23 380 402 380 402 0.95 8 12 8.4e-05 0.0045 17.6 4.2 1 23 407 429 407 429 0.97 9 12 0.00012 0.0063 17.1 1.6 1 23 435 457 435 457 0.96 10 12 2.1e-05 0.0011 19.5 5.3 1 23 463 485 463 485 0.98 11 12 0.00015 0.008 16.8 0.6 1 23 491 513 491 513 0.97 12 12 0.0009 0.049 14.4 0.3 1 23 519 541 519 541 0.95
Sequence Information
- Coding Sequence
- ATGCTGTTGGGTCGTATATGTCGTACTTGTCTCCAAAAATCTGCCGATATGCATAAATTACGGGAATGTATACAAGATATACAAATCGAAGATATGCTTAATCAATCCATACCCAATTTTGATCTGGAAATGGATGATATACCTCTGCCGGTGGAAATATGTAAGGAGTGTCTTAGTAAACTACAAATAGCTTATGATTTTGTAAAAATGTGTGCAAACAGTAATAAGGAATTAAGAAAAATCTTAAATCAACAAGAGCAAGAAATTGAAGGTTCAATGATGGCTGTCTTAGCTGAAGTAAATCCCATGGAGATATCAGAAGAAACGGATATACTAATGGATAATTTTAAAAAAGAACCCCATGATGACAATACCAATGATAATATTAACGAAGCTAAAGGAACGGAACAAAAATTGGAAATGATTAAACTTGAAATTGAATTGCAAAATGAAAGTCACCATAATGAAGACGCTAGTTCAGAGGAATATTGGCCTAATGACGACAAAGAGGATAGTGATAGCAATTTCTTTGAAAACATGGGCAAAACCTCGTTAGATATTAAACCCAAAAGAAAATACCACAGAAAAGTTCCCTTAAAACGCAGTAGCGTTAATACCTGTCTTCATTGCAATAAGGTCTTTTCCAAGAAGACTCTTTTAACGAAGCATTTACCAGTGCATGACCCGGATAATGAATTCGTATGCGATATATGCGGTTATCGCTTTTCCAGCGAAAGAAAACTTAAAACTCATATAAATGGTAAACATACAGATGTAGAATTAAGTTTATCGGGTGGGCCATATCCCTGCCCGGATTGTCCCATGATTTTCCAACAAAAAAGGTCTCTAGCTGCCCATAGTATTGTGCATGCTGAAAAAGATATTAAGTGTCAGGTGTGCGAAATGGATCTTAAGACAGTAGCTGCCCTTACCCGGCATATGAATTGTAAGCATCCCGATGTTTTGCCCTTTAAATGTAACATATGTGAGAAAGCATTTCCGGTTGAAAATCAGCTAAATGTTCACATAAATGAGCATATGGGTTATAAGAAACACAAATGTGAATTCTGTGAGAAAAGTTTTCCAACTACTTTCGCCTTAAAAGATCATGTACGCGTACATACAGGCGAATCACCATTTTTATGTGCTCATTGCGGCAATTGCTTCAAAACGGCAAATGTTTTGCGTCAACATTTACAAAGACATGGTGAGAAAAAATTCCATTGCACCGAATGTCCCATGAAATTTTATTTCAAGGAGAATTTAAACAAACATATGACTTCACACACTAAATTGAAACCACATGTTTGTGATATATGTGGCTCAGCTTTCACCAGACTATATTCATTAAAAGCTCATAAGTTTAAACATTCCGGAGAGAGACCTTTTAAGTGTGAGGATTGTAATATGAGctttgtttttaaacgccacttgaaacggcataaactcacgcataccggtgaaaagcctcacatgtgcactttttgtgatcgtgcttatgcagccagtggcgatttagttaaacatttgcgtactcatgtgggcgaAAAAACCTATTTTTGTGACCAATGCCCAGAAGCATTCAAATATTCGATTGATCTTAAGGATCATAAAATTTTGCATTATAAACAAAAATTAAATTCCCAACAACAACAGCAACAAGAAAATGACGTTAAAAGTGATGTGCTTACAGATGAAACAGTTGTAATGGAAACTGAAAGTGCTGTAGTTATCCTGGAAACACTATATGAAGTTGATAAAAATGATGATGAGTGA
- Protein Sequence
- MLLGRICRTCLQKSADMHKLRECIQDIQIEDMLNQSIPNFDLEMDDIPLPVEICKECLSKLQIAYDFVKMCANSNKELRKILNQQEQEIEGSMMAVLAEVNPMEISEETDILMDNFKKEPHDDNTNDNINEAKGTEQKLEMIKLEIELQNESHHNEDASSEEYWPNDDKEDSDSNFFENMGKTSLDIKPKRKYHRKVPLKRSSVNTCLHCNKVFSKKTLLTKHLPVHDPDNEFVCDICGYRFSSERKLKTHINGKHTDVELSLSGGPYPCPDCPMIFQQKRSLAAHSIVHAEKDIKCQVCEMDLKTVAALTRHMNCKHPDVLPFKCNICEKAFPVENQLNVHINEHMGYKKHKCEFCEKSFPTTFALKDHVRVHTGESPFLCAHCGNCFKTANVLRQHLQRHGEKKFHCTECPMKFYFKENLNKHMTSHTKLKPHVCDICGSAFTRLYSLKAHKFKHSGERPFKCEDCNMSFVFKRHLKRHKLTHTGEKPHMCTFCDRAYAASGDLVKHLRTHVGEKTYFCDQCPEAFKYSIDLKDHKILHYKQKLNSQQQQQQENDVKSDVLTDETVVMETESAVVILETLYEVDKNDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194578;
- 90% Identity
- -
- 80% Identity
- -