Pazu001058.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000030.1:536832-546586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 1 10.2 0.5 2 23 79 101 78 101 0.96 2 18 0.0026 0.14 12.9 0.8 2 23 154 176 153 176 0.95 3 18 0.061 3.3 8.6 1.1 9 23 212 226 210 226 0.94 4 18 4.9e-05 0.0027 18.3 0.7 1 23 232 254 232 254 0.98 5 18 0.022 1.2 10.0 0.4 2 23 288 310 287 310 0.92 6 18 5.5e-07 3e-05 24.5 1.1 1 23 346 368 346 368 0.98 7 18 2.7e-07 1.5e-05 25.4 5.8 1 23 374 396 374 396 0.98 8 18 0.022 1.2 10.0 0.2 5 23 470 488 469 488 0.96 9 18 0.00011 0.006 17.2 0.6 2 23 524 546 523 546 0.95 10 18 2.9e-06 0.00016 22.2 0.7 1 23 582 604 582 604 0.98 11 18 0.0011 0.062 14.0 5.5 1 23 610 632 610 632 0.98 12 18 0.00095 0.052 14.3 1.4 2 23 679 701 678 701 0.92 13 18 0.98 53 4.8 2.0 1 23 707 730 707 730 0.95 14 18 0.00011 0.0058 17.3 0.1 1 23 737 759 737 759 0.97 15 18 2.5e-06 0.00013 22.4 3.9 1 23 765 787 765 787 0.98 16 18 0.018 0.99 10.2 2.1 1 23 872 894 872 894 0.98 17 18 5.3 2.9e+02 2.5 2.0 3 23 960 981 958 981 0.91 18 18 0.018 0.95 10.3 0.8 1 20 987 1006 987 1011 0.91
Sequence Information
- Coding Sequence
- ATGGAATTAAGTGATTTGCCAATTGCTTCAAATGACCAAATTAAAAGCGAATTTATGGACTTTTCAGCGGAAGCTGAACAAATAGTGGAAACAAATATATCAGAGAGATATTACGCTGACAAATCCCAAGAAGATGAAAATCTCGAGAATAACAATATTTTCGATGTTGAAAATAGCGAAGATAATTCTGATAAGAATACTTACAACCAATGGAATGTTTATAGAATTGAAAATAAATGTGCAATATGTAAAATGAGTTTTCCTTTCCAAAGAGGTCTTCTTGAACATGCTAAAAAAACTCATCCAAAAGGTAAAGCATTAAAGTGTCAATATTGCTCCTCACTATTTACCTCGGTGTTATCAACGTATAAACATCTTAAAGAAAATCATCCTGATATTTCCAGTGCGAAAAATCGGCGAGAACATAGTATGCCTAGTATAATTTACCCCATTGAAGATAAATGCGCAGCTTGTAGAAAGGAATTTTCAACACAAAGAAGCCTTATTACTCATGTAAATAAAAGTCATCCTAACGATAAAGGTTTCAAATGTTTGCATTGTTCAATGTTATTTAAAAAAATAATATTTGTGGCTCCACATTACAAAGCAACGCATGCTATATTGCCTAAATTGTCTTTTAGTACAAATAGTTTTTTAAAATCTCATCAACGTGTACATACTGAACAAACGTCGTTTCCTTGCAATCTATGTGAGAAAACATTTGAATATAAATTATCTTTGGTTCAACATATAAAAACTCATTTGAGAGATAATATAGAACAGGATCTTTCGGATGAAGATTCTTCTAATAACATTGAAATCAATAATGATAGAATGGGAAAAATGTACAAAATTAAAAACAAATGTGCAATTTGTAAGCAGAAATTTTCTTCTCAATACATCCTTATTAGGCATGTTGAAGAGACTCATCCGAACGGAATAGCTTTTATATGTATAAATTGTCCAACGTTATTTTCAAACTTGCAATCCACATATAGACATTTCAAACAAAATCATACTAATGCCCCTAAAAATTATACCTGCGATGTCTGCGGTAAGTCGTTTTTTACAAAATCTTCATTGGAAATGCATAGACGAGCACATATGGAAGTTCGACCATTTTCCTGCAACCATTGTGATAAAAGTTTCAAACGTAAATCGAATTTGGCTAATCATAAGAAAACTCATTTTAAAGATAAGAATAAAGAGTATTGCGAGAATAATGAACAAGATCAATTTATTCGAAATGACATTGAGGATAATGACGATCAAAATCAATTATTGAATGGTGAAGATAACTATGAGATAGATGAACTAAATATGTCAATAAATTATGATTATTTTGGTAATCCAGATCAAGATGAAATAACTGGAAATGAGGAAGAACAAAAGCCATTTCCTTTCAATCTATGTGAGAAAACATTTGGATATAAAGTATCTTTGGACCAACATTTGAAAACTCATTTGAGAGATAATATAGAACATGATCATACGGATGAAGTTGACGATGTATCTGATAATATTAAAACCAGTAGTGATAGAACGGCAAAAATGTACAAAATTAAAAACAAATGTGGAATTTGTAAAGAGAATTTTTCTTCTCAAGACACCCTTATTAGGCATGTTAAGGAAACTCATCCTAACGGAAAAGCTTTTATATGTATAAATTGTCCAACCTTATTTTCAAAATTGAAATCCACATATGGGCATTACAAAAGGAGTCATTCTAACATGCCTAAAAATTATATCTGTGATGACTGTGGTAAGTCGTTTTTTTCCAATTTTTGGTTGCAAATGCATAGGCGTGTACATATGGAAGTTCGGCCATTTTCCTGTAACCAGTGTGATAAAAGTTTTAAATGTAAATCAAATTTGGGCAAACATAAGAAAATCCACCTTAAAGCTAAAAATAAAATGCAATATCAATTTATTCGAGATAGCATTAAGCATTATGACGATAATATAGATGAAGATGCTTCTAATAATATTGAAATCAATAATGATAAAATGGCAAAAATGTACAAAATTAAAAGCAAATGTGCAATTTGTAAAGAGAAATTTTCTCATCAACAAACACTTATTAGGCATGTTGAAGAAACTCATCCTAACGGAAAAGCATTTACATGTCTGTATTGTCCAGCGTTGTTTTCAAAATTGAAATCCACATATAGGCATTACAAATGGTATCACACTAATGCGCATAGAAATTATATCTGTGGTGTCTGTGGTAAGTCATATTTTTCCAATTATTTGCTGGAAGTGCATAGAGCAGTACATGTGGAAATTCGATCATTTTCCTGCAGTCAGTGTGATAAAAGTTTCAAATTTAAATCGAGCTTGACTATACATAGAAAAACTCATTTCAAAGCTAAGAATAAAGGGTATTGCGAGAATAATGAACAAGATCAATTTATTCGAGATGAAATCGATGGCATTGATATTAATGGCGATCAAAATCAATCCTTTCCTGATCATTATAAGGTAGATAATCCAAATTTATTGAATGACGATGGACACTATGCGACAGATGAACAAAATATTTCAAAAAATGATGATTACTTTGATTATCCAGATCAAGATGAAATAACTGGAAATGAGGAAGACCAAAAGCCATTTCCTTGCAATCTATGTGAGAAAACATTTGGATGTAAAGTATCTTTGGACCAACATTTGAAAACACATTTGAGAGATAATATAGAACAAGATCATATGGATGAAGATACTTCTATTAACATTGAAAATTTATTGAATGGCGATGAACACTATGTGAGAGATGAACGAAATATTTCAACAAATGATGATTATTTTGCTAATCCAGGTCAAGATGGAATATCTGGAACTGTGAATGAAAAAGAATCTGAAGTCAGTCAAAGTGAATGTATCATTTGTACTAAGGAATTTAAATGCAAGCAATCTTTAGACGAGCATTTGAAAAGTTCTCATCCCGAAATTGAATTATTCAAATGTCCTTACTGTGATGATAATTTCTTTAGTCAAGACTCTTTATCACTACACGTAACATTAATGAAGCATTGA
- Protein Sequence
- MELSDLPIASNDQIKSEFMDFSAEAEQIVETNISERYYADKSQEDENLENNNIFDVENSEDNSDKNTYNQWNVYRIENKCAICKMSFPFQRGLLEHAKKTHPKGKALKCQYCSSLFTSVLSTYKHLKENHPDISSAKNRREHSMPSIIYPIEDKCAACRKEFSTQRSLITHVNKSHPNDKGFKCLHCSMLFKKIIFVAPHYKATHAILPKLSFSTNSFLKSHQRVHTEQTSFPCNLCEKTFEYKLSLVQHIKTHLRDNIEQDLSDEDSSNNIEINNDRMGKMYKIKNKCAICKQKFSSQYILIRHVEETHPNGIAFICINCPTLFSNLQSTYRHFKQNHTNAPKNYTCDVCGKSFFTKSSLEMHRRAHMEVRPFSCNHCDKSFKRKSNLANHKKTHFKDKNKEYCENNEQDQFIRNDIEDNDDQNQLLNGEDNYEIDELNMSINYDYFGNPDQDEITGNEEEQKPFPFNLCEKTFGYKVSLDQHLKTHLRDNIEHDHTDEVDDVSDNIKTSSDRTAKMYKIKNKCGICKENFSSQDTLIRHVKETHPNGKAFICINCPTLFSKLKSTYGHYKRSHSNMPKNYICDDCGKSFFSNFWLQMHRRVHMEVRPFSCNQCDKSFKCKSNLGKHKKIHLKAKNKMQYQFIRDSIKHYDDNIDEDASNNIEINNDKMAKMYKIKSKCAICKEKFSHQQTLIRHVEETHPNGKAFTCLYCPALFSKLKSTYRHYKWYHTNAHRNYICGVCGKSYFSNYLLEVHRAVHVEIRSFSCSQCDKSFKFKSSLTIHRKTHFKAKNKGYCENNEQDQFIRDEIDGIDINGDQNQSFPDHYKVDNPNLLNDDGHYATDEQNISKNDDYFDYPDQDEITGNEEDQKPFPCNLCEKTFGCKVSLDQHLKTHLRDNIEQDHMDEDTSINIENLLNGDEHYVRDERNISTNDDYFANPGQDGISGTVNEKESEVSQSECIICTKEFKCKQSLDEHLKSSHPEIELFKCPYCDDNFFSQDSLSLHVTLMKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -