Pazu010929.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000306.1:641584-650591[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-19 9e-16 57.6 0.0 2 45 469 513 468 513 0.97 2 2 4.6 8.8e+03 -3.2 1.1 3 12 546 555 546 558 0.83
Sequence Information
- Coding Sequence
- atgcCCACCGACCCTGCCAATTTAACAAAATCTGATAGTAAATCATCAAATGATGCTACAGAATTGGTCGGTAGTGATGGTAATAATGGACAGTTGggtggtggtaatagtggtggtggaggcggcagtgcaggcggtggtagtggtggtggcaacacaagtagcggtggtttgggtagtagtggtggtggcagtgttagcgattcaatatggggtagtactgaatcacaatttcaacagcaacaacaacagcagcaacagcaacatcaacaccatcatcagcaacagttacaacaacaacagcagcagcaacaacaacaacatcatcagcagcagttacatcaacagcagcaacaattgcacacacagctgcaaaatagtcagacacaaacctcacaacaacagcaacaacaacaacagcaacaacatcatcaacaacaactacgacgtacaccgtctcctttaggcgctgGCGCCTCACCAGCCACCAGACGAAAACGTTTAAGAAAATCCTCAAATAACGGATCCGGTGAACGTACTAATTCTGAAGACCATAACACATCTTTGGATGCAGCCACAGCGGGTGGTTTAACTTTGTCCCAAATGAGTCAAATGTCATTCGGCGGTGCAGCTACAAACAGTGCTCTCGGTGGTTTAGCCACACACTCTTTACACACAGCTAAATTACTTAAAGAAGCATCTAATAATGATCTAGATACAAATCCCCAAGATTCAGATAGTTTAGATGATACCCATGGACATGTACATATGCAAATTAAACCTGAAGTTGATATGGGCGGAGTACCACAATCTATGCCATTGGATATATCGGGTGCTACAACGCCCTCTGAACATGATGCTCCCAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCCTGTCCCACCAATTTAATTGgcaataacaacaacaatcaaaatactaataccaacaataacaacagctcgagtagtgatcaacagcaacaacagcagcagcaacatcgtcaacaacaagaagccgttgccagtcaacagcaacagcagcaacaacaacagcagcagcaacacttgcaacaattacaacaatatcaacatcaacaaaactctgcatattcgccacaaatcataacagttagcggttatacccatgctgcagctgcagccgttgcagcagcCCAAAATTTATCACCGCCTTCGCCCAGCGATGGCAATATGGTGCAATCAGTATACAGTCAAGGTCCAACGCCCATCCAATCACCGGTGGGCAATGCTTCGGGCTCTGGCAATGGCAACAACATGACCGGTGGCAATTCAGCTAACAATGCCAATATCAAGCGTAAGCGTTCGGTTAATCCACAGGGTGATGAAAATTTTATACGGGCCCTGGAGGCAGTGCGTACGGGTGGTATAGGTTTCTGTAAAGCCGCACGTCTGTATGGCGTTAACAATCGTACTTTATGGCTGGAATATAAGAAACGCGGTTATCCTGTGTCCAGACCCAGTATAAAATCACGTGTTGTCAAGCAAGAACCGAATCTCTCACCCTCCCCTCCACCACCTGCCAATGCCCAAGACGATACCAATGAGAACTATGATCATATGGCAGCTGCAGTGGCGGCTGCCCAAACAGCCGCACTAAATATGCAAATACCACCGACTTCTGAAACACCGACACCCTCATTAATGTGTACACCCCATCATGCTGGTACAGCAGCCGGTGCTACCACACATCCTACTATGGGTGTAATGAGTTTTTTGGATACCCGCCACATGGACTTCCCAGCCAGTCTGCATTCAATGTCACGCCAACGTTATATTGATGCTGGTGCTGGTGGTGGTGCCGGTACGGCGGGTACCATTAATGTTAATCCGGCAGCGGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MPTDPANLTKSDSKSSNDATELVGSDGNNGQLGGGNSGGGGGSAGGGSGGGNTSSGGLGSSGGGSVSDSIWGSTESQFQQQQQQQQQQHQHHHQQQLQQQQQQQQQQHHQQQLHQQQQQLHTQLQNSQTQTSQQQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAATNSALGGLATHSLHTAKLLKEASNNDLDTNPQDSDSLDDTHGHVHMQIKPEVDMGGVPQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNNQNTNTNNNNSSSSDQQQQQQQQHRQQQEAVASQQQQQQQQQQQQHLQQLQQYQHQQNSAYSPQIITVSGYTHAAAAAVAAAQNLSPPSPSDGNMVQSVYSQGPTPIQSPVGNASGSGNGNNMTGGNSANNANIKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPPPPANAQDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGGGAGTAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- -