Pinq024438.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49565724-49567768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.076 4.8 8.8 0.3 3 23 52 72 51 72 0.98 2 15 8e-06 0.0005 21.3 1.5 1 23 76 98 76 98 0.98 3 15 0.002 0.13 13.8 2.1 1 23 104 126 104 126 0.98 4 15 0.13 8.2 8.0 0.1 3 23 134 154 132 154 0.97 5 15 0.026 1.6 10.3 0.3 1 23 160 182 160 182 0.99 6 15 0.0008 0.05 15.0 0.2 1 23 188 210 188 210 0.98 7 15 0.023 1.4 10.5 1.9 1 23 216 239 216 239 0.95 8 15 0.0001 0.0065 17.8 2.5 1 23 295 317 295 317 0.96 9 15 1.4e-05 0.00089 20.5 4.9 1 23 323 345 323 345 0.98 10 15 2.7 1.7e+02 3.9 1.8 1 23 351 373 351 373 0.93 11 15 1.4 90 4.8 2.9 3 23 390 410 388 410 0.92 12 15 0.22 13 7.4 2.3 2 23 417 438 416 438 0.97 13 15 0.0015 0.097 14.1 2.5 2 23 445 466 444 466 0.97 14 15 0.00049 0.03 15.7 2.1 3 23 474 494 472 495 0.95 15 15 2.2e-05 0.0014 19.9 1.3 1 23 500 522 500 522 0.99
Sequence Information
- Coding Sequence
- ATGTACGACGAGCCGTTGAAAAGCGAACTGACCGATTTCGAGCCTGATCGGTGCGGAATCGTCGCGAAGCACGCCCTGCCACGCACCGGTGGAATACCGCGCGTGCGTAAATCCGGAAAGACAGGGCGCAAACGCGGCGTGGTGCAACTTCTGTGCGAGACCTGCGATTTTAAGACCACCTGGCCCTACCTCCTGAAGAAACACATCGCGACGCACGACAAGCCGTTCCAGTGCGATCGCTGCGGCGTTCGGTTCGCGTCGTCCTCCACCTTGAAAACTCACATGTTCcggcacaccggcgagaaaccgcaCGAGTGCGACGTCTGCGGCTACAAGTGCACCCAAATCGGAATACTGACGCGGCACATGATGACGCACAGAGGCGAGAAGCCTTTCGGCTGTGAACTGTGCGATTACAAGGCGGTCAGCAAGGGAAACATAGAGGCCCACAAGCTCACGCACACGAAGGAGAAGGCCTTCCAGTGTGATTTCTGCGAGTATAAAGCGAGAGCCGCCGAAACGATCCGGGTGCACATGCGGACgcataccggcgagaaaccgtaccAGTGCGGGGTTTGCGCGCGGAGGTTCGGCATCTCCAGGGGCCTGAAGAGGCACATGCTcatacataccggcgagaaaccgtacgCGTGCGATTTTTGTGATTATAGGTCGACGCACGCGGGAAACGTGAAGACGCACGTGAAATACAAGCACAAAGAACAATGTTTCGTCGCTAAACTCGTCGAGGTTTTTAAAGAGGAGACTCCCGCCGACCCATTTTCTTACGCTCGACCACTTTTACCGTTGGCCTTCCCCGAACCCGCACCACCCAAAACCGGATACTCAAGGCAAATCGAATTGCAcgcccccaaaaaaaaattcacgtgCAGCCACTGCAACTACGCCTGCGACCGACCCGGCCAGCTAACCAAGCACATGGTGGCGCACTCTCTCGACAGGCCGCACAAGTGCGGCCTGTGCGGCTACggctttaaaaaaaagcaacaccTCAACACGCACATGCGCATACACACCGATCAGAAGCCCTTCGAGTGCGAACTGTGCGATTTCAAGTGCAAGTGGGACAGCACCATGAAACGCCACGCGGCGAGCCACACCGGCGATAAACCCCTCCCGAACGACGCCGAAGAGAAACCGTTCGGATGCGGCGCGTGCGCGTACAAGTGCAGCAAAATGCAGCACCTCAAAACGCACATGCTCATACACACCGATCAAAAACCCCTGCAGTGCAACCACTGCGATTTTAAGTCCAGGTGGACGGGTAACATGCAGCGGCACGTGATGActcacaccggcgagaaacgcCTTACGTGCAACATGTGCGGTTACATGTGCAACCAGGCCACCAGGTTGAAAGAGCACATGTTCACccataccggcgagaaaccgttcggctgCGACGTGTGCGGGTACAGGAGCATCCGGAAGCGCTACCTGAAGTTGCATTTGAGGACGCACCACAGCAATAAGCCGTACGAGTGCAACCTGTGCGAATACAGGAGCGTCCAAACGAGCAATTTAAAAAGACACATGATGAGGCATAGGGGCGATAATCCGGTTGAGAGTGAACAGGGCGACGAAAGCGAAGACGAGAAAAAACACACTGTGCCGCACACCGACGATAATACAGAGCAATTTAAAAAGACACGTGATGACGCATAG
- Protein Sequence
- MYDEPLKSELTDFEPDRCGIVAKHALPRTGGIPRVRKSGKTGRKRGVVQLLCETCDFKTTWPYLLKKHIATHDKPFQCDRCGVRFASSSTLKTHMFRHTGEKPHECDVCGYKCTQIGILTRHMMTHRGEKPFGCELCDYKAVSKGNIEAHKLTHTKEKAFQCDFCEYKARAAETIRVHMRTHTGEKPYQCGVCARRFGISRGLKRHMLIHTGEKPYACDFCDYRSTHAGNVKTHVKYKHKEQCFVAKLVEVFKEETPADPFSYARPLLPLAFPEPAPPKTGYSRQIELHAPKKKFTCSHCNYACDRPGQLTKHMVAHSLDRPHKCGLCGYGFKKKQHLNTHMRIHTDQKPFECELCDFKCKWDSTMKRHAASHTGDKPLPNDAEEKPFGCGACAYKCSKMQHLKTHMLIHTDQKPLQCNHCDFKSRWTGNMQRHVMTHTGEKRLTCNMCGYMCNQATRLKEHMFTHTGEKPFGCDVCGYRSIRKRYLKLHLRTHHSNKPYECNLCEYRSVQTSNLKRHMMRHRGDNPVESEQGDESEDEKKHTVPHTDDNTEQFKKTRDDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -