Pinq024453.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49644191-49650590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.085 5.3 8.6 2.5 1 23 47 69 47 69 0.97 2 22 0.0014 0.089 14.2 1.1 1 23 75 97 75 97 0.98 3 22 0.0008 0.05 15.0 0.3 1 23 103 125 103 125 0.98 4 22 0.0066 0.41 12.1 4.1 3 23 133 153 131 153 0.97 5 22 0.0081 0.51 11.9 3.5 1 23 159 181 159 181 0.98 6 22 0.011 0.66 11.5 7.5 1 23 187 209 187 209 0.97 7 22 6e-05 0.0037 18.6 1.4 1 23 231 253 231 253 0.98 8 22 4.3 2.7e+02 3.3 4.3 3 23 261 282 259 282 0.94 9 22 0.0038 0.24 12.9 1.1 1 23 289 311 289 311 0.98 10 22 0.024 1.5 10.4 4.1 1 23 317 339 317 339 0.97 11 22 0.0015 0.097 14.1 1.3 3 23 357 377 355 377 0.96 12 22 0.0011 0.066 14.6 2.5 1 23 383 405 383 405 0.98 13 22 0.00025 0.016 16.6 0.4 1 23 454 476 454 476 0.98 14 22 0.0023 0.15 13.6 3.1 2 23 483 504 482 504 0.95 15 22 0.016 0.98 11.0 3.7 3 23 512 532 510 532 0.98 16 22 0.011 0.69 11.4 5.6 3 23 540 560 538 560 0.96 17 22 0.6 38 6.0 3.1 2 23 568 590 567 590 0.94 18 22 0.19 12 7.6 4.2 1 23 596 618 596 618 0.97 19 22 0.0016 0.1 14.1 1.5 1 23 624 646 624 646 0.97 20 22 0.022 1.3 10.5 2.3 3 23 654 674 652 674 0.98 21 22 7.9 5e+02 2.4 9.8 1 23 680 702 680 702 0.92 22 22 0.00024 0.015 16.6 1.6 3 23 710 730 708 730 0.97
Sequence Information
- Coding Sequence
- ATGCGCTCGGAATTGAGTTCGCTGTGTTTCGATAACGCCTGGCTCTGGCAACCGTCGCCCGTCGTTAAAAGTATGATTCCGAAAGCGGCCGCAGACTTTAAAAAAGTgtTCCTGTGCGTTCCCAGACCGAGAAAAACATTCGAATGTCAAATATGTGACTCCAAACACAAAAGTCGGGCGAACTTACGCCGACACTTCCTcatacataccggcgagaagccgttcacctGTGATTTTTGCGGTTATCAGTGCCGAGGCGTTTCGACCCTGAACGTTCACATGTTAATACACACGGGCGAGAAGCTGTTCAGATGCGTTCTCTGCGATTATCAAAGCGTGCGCGTCGGGAACTTAAAGAAGCAcatgttaatacacaccggcgagaagccgtacggctgcgatctttgcgattataaatgccggcagGCCACGCATCTGAGGCGCCACAAGTtgatacacaccgacgagaggccgttcagttgtgatctctgcgattacaaatgccgccAGACGGGAACGCTGAAAGAGCACAAgctgacgcacaccgacgagaagccgttctcatgcgatctttgcgattttaaatgccgcCATCGCGGGAACTTGAAAAAGCACAAGCTGAAGCACACCGACGCGAAGCCGCCGAGCTGTTTGGCGGAGCACTCGCTGACGCATACTCACGAGAAGCCCTTTCGCTGCGCCGTTTGCGGTTACGAGTGTCGGAATTCCGCGACGCTGAAACGGCACGTgttaacacacaccggcgagaagccgtttgGCTGCGAGctgtgcgattacaaatgccgagcCGAAAGGTACTTGAAGTCGCATTTGCATAATAAACACGCCGCGGACGCGAAGAGATTCCGTTGCGAGATCTGCGGTTACAAGTGCTTACAGAGGCCGGCTCTGAACAGGCACGTGCTGACGCACACCGGAGAGAAACCGTTTAGCTGCGGcttttgcgattacaagtgcggGCGCAGGGAAACCTTAAGGCGACATGAATACACGCACGCGGGTCCTAAACATCACGTgctaacgcacaccggcgagaaaccgttagactgtgatctttgcgattataagtgtcgGGTCGTCACGAATTTAAAACGGCACATGTTAATAcacgccgacgagaagccgtttagctgtgatctttgcgattataaatgtcgccAGGCGAGGGCCTTGAAAGAGCACAggctaacgcacaccgacgagaagccgttcaattGCGACGTTTTCGGTTATAAATGTCGCCAGGTCGGGGCATTGAAAGAGCACAAgctgacgcacaccgacgagagaCCGTTCAGGTGTCTAACGAAAGTTAAAATTACAAAGGGAGAAAAAACATTCGAGTGCCGAATATGCGACGCCAAACTTAAATCTCGTACAAATCTGCGCCAGCACATCCTCGTACATACCGGTGAGAAGCCGCTCagttgtgacctctgcgattacaaatgccgaaaACCCAGCGACCTGAAAAAGCACAAGCTAAaccacaccgacgagaagccgttcggttgtgacctctgcgattataagtgccgtcGCGTCGGACATCTCAAAGCgcacaagttaacgcacacGAGCGAGAAGCCAATCaattgtgacctttgcgattataaatgcaaaCGGCTCGGACATTTGAAGAAGCACAAGTTAAGACACGCAGGCGAAGACGATCTGCTCAGCTGCGAACTCTGCAATTATAAATGCCTGCAACCCAACGAATTGAAAAAGCACAGGAAGTTaaagcacaccggcgagaagccgttcagttgtgatctttgcgactATAAGTGCCGGTTCGGCGGAAAATTAAAGAAGCACAAGCTAAGTCACATCGATGAGAAGCCGTTCTTTTGTggcctctgcgattataaatgccgacgtaTTGGACAGTTGGAAACTCACATGTTAATACACAcgaacgagaagccgttcggctgtgacctctgcgattacaaatgccgtcGCGTCGATTATTTGAAAGAGCACAAGTTAACACACACGAGAGAGAAGCCTTTTAGTTGTGACttctgcgattataagtgccggcACGCTTCGCATTTAAAATGCCACAACCtgatacacaccgacgagaagcctttCGGTTGTGAGCTTTGCGATTACAGATGCCGGAAGGCCGGAAACTTAAAGAAGCACATGTTAATACATGGCAGCCGGAAGCCGTTCAGGGCTTTAAAGAGGCGCAAGCTGAGACAAACCGACGAGAAACCGCTggtgaaaaattcaaaatcggaTCAACCGCTGGTTGATTAA
- Protein Sequence
- MRSELSSLCFDNAWLWQPSPVVKSMIPKAAADFKKVFLCVPRPRKTFECQICDSKHKSRANLRRHFLIHTGEKPFTCDFCGYQCRGVSTLNVHMLIHTGEKLFRCVLCDYQSVRVGNLKKHMLIHTGEKPYGCDLCDYKCRQATHLRRHKLIHTDERPFSCDLCDYKCRQTGTLKEHKLTHTDEKPFSCDLCDFKCRHRGNLKKHKLKHTDAKPPSCLAEHSLTHTHEKPFRCAVCGYECRNSATLKRHVLTHTGEKPFGCELCDYKCRAERYLKSHLHNKHAADAKRFRCEICGYKCLQRPALNRHVLTHTGEKPFSCGFCDYKCGRRETLRRHEYTHAGPKHHVLTHTGEKPLDCDLCDYKCRVVTNLKRHMLIHADEKPFSCDLCDYKCRQARALKEHRLTHTDEKPFNCDVFGYKCRQVGALKEHKLTHTDERPFRCLTKVKITKGEKTFECRICDAKLKSRTNLRQHILVHTGEKPLSCDLCDYKCRKPSDLKKHKLNHTDEKPFGCDLCDYKCRRVGHLKAHKLTHTSEKPINCDLCDYKCKRLGHLKKHKLRHAGEDDLLSCELCNYKCLQPNELKKHRKLKHTGEKPFSCDLCDYKCRFGGKLKKHKLSHIDEKPFFCGLCDYKCRRIGQLETHMLIHTNEKPFGCDLCDYKCRRVDYLKEHKLTHTREKPFSCDFCDYKCRHASHLKCHNLIHTDEKPFGCELCDYRCRKAGNLKKHMLIHGSRKPFRALKRRKLRQTDEKPLVKNSKSDQPLVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -