Pinq024421.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:49473458-49476759[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0013 0.081 14.4 0.2 1 23 23 45 23 45 0.98
2 25 1.2 77 5.0 2.5 3 23 53 73 51 73 0.96
3 25 0.00071 0.045 15.2 0.3 1 23 79 101 79 101 0.96
4 25 0.0081 0.51 11.8 0.9 1 23 107 129 107 129 0.97
5 25 0.00012 0.0075 17.6 1.2 1 23 135 157 135 157 0.98
6 25 0.0086 0.54 11.8 3.2 1 23 163 185 163 185 0.97
7 25 0.0021 0.13 13.7 4.2 1 23 213 235 213 235 0.98
8 25 0.018 1.1 10.8 4.4 1 23 241 263 241 263 0.98
9 25 0.058 3.6 9.2 2.9 3 23 271 291 269 291 0.97
10 25 1.5 94 4.7 8.2 1 23 296 318 296 318 0.97
11 25 0.0099 0.62 11.6 4.9 1 23 324 346 324 346 0.98
12 25 0.00068 0.042 15.2 2.7 1 23 352 374 352 374 0.98
13 25 0.044 2.8 9.5 4.9 3 23 382 402 380 402 0.98
14 25 1.1e-05 0.00069 20.9 0.6 1 23 424 446 424 446 0.97
15 25 0.011 0.69 11.4 0.8 3 23 454 474 452 474 0.98
16 25 0.0017 0.11 14.0 3.0 1 23 480 502 480 502 0.98
17 25 3.2 2e+02 3.7 2.9 3 23 510 530 508 530 0.97
18 25 0.73 46 5.7 3.7 2 23 536 557 535 557 0.95
19 25 0.0037 0.23 12.9 5.2 1 23 563 585 563 585 0.98
20 25 0.0037 0.23 12.9 3.6 1 23 591 613 591 613 0.95
21 25 0.012 0.76 11.3 1.8 1 23 619 641 619 641 0.97
22 25 0.5 31 6.2 8.5 1 23 646 668 646 668 0.98
23 25 0.0036 0.23 13.0 2.7 1 23 674 696 674 696 0.98
24 25 0.1 6.4 8.4 3.1 3 23 704 724 702 724 0.97
25 25 5.8 3.7e+02 2.9 5.8 3 23 732 752 730 752 0.96

Sequence Information

Coding Sequence
ATGACCGTGACTCTTTGTTTCAGGTGTCAACTGTTCGCTAAACCCGAAATTCCGACCGACAAAACCTTCGTGTGCCGGATTTGCAGCGCTGAATTTAAAGCCCGCGCTAACTTGCGAAACCACACGatgatacacaccggcgagaagccgttcggttgcgaCGCCTGCGATTATAGATGCCGACGGTTCCTCGACCTGAAGATTCACAAGCTgaagcacaccggcgagaatcCGTTCGCttgcgacctctgcgattataaatgtagACGGCCCGCGGAATTGAAAATTCACGCGCTGATACACagcgacgagaaaccgttcgccTGTGACGTCTGCGATTATAAAACTCGGCTGTTCGGCAACCTGAAGCAGCACAAGCTGACGCACGTCGACGAGATGCCGTTCCGCTGCGCCATCTGCGATTACAGAAGTCGACGCGTGTACAACTTGAAGGATCACATGTtgaaacacaccgacgagaagccgttcagctgtgatctctgcgattataaatgccgacgcgTCGGGCAGTTGAAGgagcacaagttaaagcacatcAAAGACGAGCCCGTCAGCTGTGATCTTTACGATTATGAAATCAACGGGGATTTGGAAATTCAagccggcgagaagccgttcagttgtgatgtctgcgattataaatgcaagCGCCTCAGACAGTTAAAGGAAcacaagttaacgcacaccggcgaaaGACCGTTTAGCTGTGATagttgcgattataaatgcaggCGCTTCGCGCAGTTAAAAGAgcacaagttaacgcacactggcgagaaaccgttcggttgcgaCGTGTGCGACTTTAAATGCCGACTCTTGGGAAATTTGAAGAGGCACAAGTTGAAACACGCCGAGAAACTGTTCAGTTGCGgcctgtgcgattataaatgccacAGAAATTGCGAATTGAAAATTCACAAGCTGAAGCACACcggtgagaagccgttcagttgtaatctctgcgattataaatgccgacgggTCCGTGGTTTGAAACAGCACATGTTCAAACAcagcgacgagaagccgttcacttgcgatctttgcgactATAAAACTCGAGATAGCGGATGCTTGAAAGAGCACATGTTgaagcacaccggcgagaaaccgttcggctgTGATCAGTGCGATTACAAATGCAGAAGAATGGGACACTTAAAAGAGCATAAGCTAACGCACACCGGTGAGAAGCAGTTCAGgtgGCAACCCTTCCCTGAATCTAAAAACGTGGCCAAAAAGACATTCGCCTGCCGAATTTGTGACACTAAATTTACGGTCCGTGGCAGTTTGCGGAAACACATGATGATACACagcggcgagaagccgttcggctgCGACGTCTGCGATTATAAAAGCCAATTCCAGGGCAACCTGAATCGGCATAAGCTAACGCACATCGACGAGATGCCGTTCACCTGTGACACTTGCGACTACAAATGCAGACGCCTCGCACAGTTAAACGTCCACAAATTatcgcacaccggcgagaaaccgtttgGCTGCGACGTTTGCGACTTTAAATGCCGACTGTTGACAGTCTTGAAGAAGCACAAGTTAAGACACACCGAGAAGCTGCtgagttgtgacctttgcgattataaatgccacGCAAATTATAACTTAAGAATTCACAGTTTAAAGCACACCGGTGAGAAGCCGTTCACGTGTAACGTCTGCGGTTTTAAATGCAGACACGTCGGAAGTTTAAAGCAGCATAGGTTAACACACAGCGATGAGATGCCGTTTAGCTGTGATGTTTGCGACTATAAATGCAGACGCTTCTCGCAGTTGAAGGATCACAAATTAGCGCACACCGGTGAAAAACCGTTTAGCTGTGACGTCTGCGATTTTAAGTGCCCGCTGTTGGCAAACCTGAACAGGCACAAGTTGAAACACACCGAGAAACTGTTCAGGTGcggcctttgcgattataaatgccacAGGAATTGCGATCTAAAAATTCACAGGTTGAAGCACACCGAcgaaaagccgttcagctgcgacgtctgcgattataagtgcagACGCGTCGGAACTCTGAAAGATCACAAGTTGACGCACAGCGGTGAGAAGCTGTTCGGctgtgatctgtgcgattataaatgccgacagttCAGGAGTTTGAAGCTTCACGTACTgaagcacaccggcgagaacCCGTTCGGCTGTGACGCTTGCGATTTCAAATGTCACACCGAGAAGTCGTTGAAGAGGCACAAgttgaaacataaaatttataaatcagaAACATATGCAACGAATTAA
Protein Sequence
MTVTLCFRCQLFAKPEIPTDKTFVCRICSAEFKARANLRNHTMIHTGEKPFGCDACDYRCRRFLDLKIHKLKHTGENPFACDLCDYKCRRPAELKIHALIHSDEKPFACDVCDYKTRLFGNLKQHKLTHVDEMPFRCAICDYRSRRVYNLKDHMLKHTDEKPFSCDLCDYKCRRVGQLKEHKLKHIKDEPVSCDLYDYEINGDLEIQAGEKPFSCDVCDYKCKRLRQLKEHKLTHTGERPFSCDSCDYKCRRFAQLKEHKLTHTGEKPFGCDVCDFKCRLLGNLKRHKLKHAEKLFSCGLCDYKCHRNCELKIHKLKHTGEKPFSCNLCDYKCRRVRGLKQHMFKHSDEKPFTCDLCDYKTRDSGCLKEHMLKHTGEKPFGCDQCDYKCRRMGHLKEHKLTHTGEKQFRWQPFPESKNVAKKTFACRICDTKFTVRGSLRKHMMIHSGEKPFGCDVCDYKSQFQGNLNRHKLTHIDEMPFTCDTCDYKCRRLAQLNVHKLSHTGEKPFGCDVCDFKCRLLTVLKKHKLRHTEKLLSCDLCDYKCHANYNLRIHSLKHTGEKPFTCNVCGFKCRHVGSLKQHRLTHSDEMPFSCDVCDYKCRRFSQLKDHKLAHTGEKPFSCDVCDFKCPLLANLNRHKLKHTEKLFRCGLCDYKCHRNCDLKIHRLKHTDEKPFSCDVCDYKCRRVGTLKDHKLTHSGEKLFGCDLCDYKCRQFRSLKLHVLKHTGENPFGCDACDFKCHTEKSLKRHKLKHKIYKSETYATN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-