Pinq024370.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:48852749-48855553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.003 0.19 13.2 5.2 1 23 22 44 22 44 0.98 2 18 0.015 0.91 11.1 1.9 1 23 50 72 50 72 0.98 3 18 1.1 67 5.2 0.0 4 20 81 100 80 102 0.83 4 18 0.00018 0.011 17.0 0.9 2 23 166 187 165 187 0.97 5 18 0.00046 0.029 15.8 4.9 1 23 193 215 193 215 0.99 6 18 0.0012 0.073 14.5 1.8 1 23 221 243 221 243 0.97 7 18 0.0004 0.025 16.0 1.0 1 23 249 271 249 271 0.99 8 18 0.00026 0.016 16.6 5.1 1 23 277 299 277 299 0.98 9 18 2.9 1.8e+02 3.8 0.4 1 13 305 317 305 318 0.89 10 18 0.0015 0.094 14.2 2.7 1 23 384 406 384 406 0.98 11 18 0.00036 0.022 16.1 0.7 1 23 416 438 416 438 0.98 12 18 0.0038 0.24 12.9 5.1 1 23 444 466 444 466 0.98 13 18 0.00028 0.017 16.5 1.0 1 23 472 494 472 494 0.98 14 18 0.02 1.3 10.6 3.6 1 23 500 522 500 522 0.98 15 18 0.00026 0.016 16.6 0.6 1 23 529 551 529 551 0.98 16 18 0.0051 0.32 12.5 3.5 1 23 557 579 557 579 0.98 17 18 0.19 12 7.5 4.1 1 23 585 607 585 607 0.97 18 18 0.056 3.5 9.2 5.9 1 23 613 635 613 635 0.98
Sequence Information
- Coding Sequence
- ATGAGCAATAACTTTTGTTTCAGGGTGTACATCGAAAAACATAAACCTAACCCGGCAGACTCTTTCAAATGCGGTCTGTGTGATTACACGTGCGCCACTTCACGACATTTCATCAGACACGTGTACACGCACACCAATGAGAAACCGTTTCGTTGCGACGTTTGTTCCCGTCAGTGCTTCGACGCCAAGGAATTCAAGGCTCATGCGTTGACACACGCAGGCGAAAAGGCCGGTGGTTGCGACAAACCAGTTCAGTGCGGCCTGAAACTTACGAAAGCCGACGACTTGAAGGCGCACGTGTTCACGCGCACAGGCGAAAAGGCCGGTCGAGGGGAAGAACGTCCCCGCCGTCGCAACAAACCAGTTCAGCCCGACCGCCGCGGTCTGAAACTTACGAAAGCCGATGACCCGAAGGCGCACGTGTTCACGCGCACGGGCGAAAAGGccgttcaagaaaaaaaactcacccatCCGCGTCGTCGAGACAAATCGGTTCAGTGCGACCGCTGCGGTCTGAAACTCACGCAAGCCGAACACTTGAAGGCGCACATGTTCACGCACACAGGCGAAAAGCCCTTCAAgtgcgacctctgcgattacagGTGCAGGCAGACGGGAACGTTAACCACGCATCGGCGGACGCACACCGGTCTAAAACCGTTCGCTTGTAACCTCTGTGAGTACAGGTGCTCCGAAAGAGGTTCTCTGAAAGTGCACATGACGACACATTCCGACGTTAAACCGTACAAGTGCAATATGTGCGAGTATAGGGGGTCCACGGCGAGCCGCCTTAAGTTGCACGTGCGCACGCATACCGGCGAGAGACCGTACAGTTGTAACATGTGCTCTCGGAAATTTAGTAGTTCCGGGTGCTTGAACAAGCACTTCATGACGCATACCGGTGAGAAACCGTTTAAGTGCGACCTGTGCGATTATCGTTCCTCGCGCAGaGTGCCAATTACATCTAAGTCTAAGATTCTGAGCAAGAGGACACTCGGGCGCCACCTTCGCGATTCTGAATTTAAGAAACCTGGAGGCAGACACGTTGCGATACATACGGGCGAGAAGCCATCCGGTCGTGATTTTCGCAAACACAAATTCGGAAAATCTTTCAAACAGCATATCtcaacgcacaccgacgagaagccgttcagttgtgatcaatgcgattacaagtgccgacaAGTTGGAACGCTGAAGCAGCATTTGGAGACGCACACCGATGATGGCGATGCGGCgaagccgttcagctgtgacctttgcgattataaagggCGGCGTCTGTGGACGCTGAAACGGCACATACtaacgcacaccggcgaaaagccgTTTAGTTGTCACctgtgcgattacaagtgccgtcAGGCCGGCGATTTTAAAACGCATGTTTCGACGCATAACGGCGAggagccgttcagttgcgacctTTGCGACAGCAAATTCGCAAAATACGGAACTTTAAAAAAGCATATCTTGACACACgccgatgagaagccgttcagttgtggtGAGTGCTATTACAAGTGCCGAAAAATCGAAACGCTGAAGCGGCATTTGGAAACACACACCGATGAGGCGAAGCAGTACAGctgcgacctttgcgattataaagggCGTCGTCTGTGGACGCTGAAACGGCACATActaacgcacaccggcgagaagccgttcagttgtcacctgtgcgattacaagtgccgtcAGGCCGGCGACATTAAGACGCATATTTCGATGCACAACGGCGAAAAGCCGTACAGTTGTGAATTTTGTGATTATAAGTGCCGGGAAAGGAGAAGATTGAGGATACACTTGTTCgtacataccggcgagaaacctTTCAGTTGTGATttctgcgattataagtgcaaGGAAGCGAGACTTTTAAAGCACCACGTTCAGAAACACTTCGGCCCTTTATAA
- Protein Sequence
- MSNNFCFRVYIEKHKPNPADSFKCGLCDYTCATSRHFIRHVYTHTNEKPFRCDVCSRQCFDAKEFKAHALTHAGEKAGGCDKPVQCGLKLTKADDLKAHVFTRTGEKAGRGEERPRRRNKPVQPDRRGLKLTKADDPKAHVFTRTGEKAVQEKKLTHPRRRDKSVQCDRCGLKLTQAEHLKAHMFTHTGEKPFKCDLCDYRCRQTGTLTTHRRTHTGLKPFACNLCEYRCSERGSLKVHMTTHSDVKPYKCNMCEYRGSTASRLKLHVRTHTGERPYSCNMCSRKFSSSGCLNKHFMTHTGEKPFKCDLCDYRSSRRVPITSKSKILSKRTLGRHLRDSEFKKPGGRHVAIHTGEKPSGRDFRKHKFGKSFKQHISTHTDEKPFSCDQCDYKCRQVGTLKQHLETHTDDGDAAKPFSCDLCDYKGRRLWTLKRHILTHTGEKPFSCHLCDYKCRQAGDFKTHVSTHNGEEPFSCDLCDSKFAKYGTLKKHILTHADEKPFSCGECYYKCRKIETLKRHLETHTDEAKQYSCDLCDYKGRRLWTLKRHILTHTGEKPFSCHLCDYKCRQAGDIKTHISMHNGEKPYSCEFCDYKCRERRRLRIHLFVHTGEKPFSCDFCDYKCKEARLLKHHVQKHFGPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -