Pinq024406.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:49216902-49236124[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.29 18 7.0 1.2 3 23 12 32 10 32 0.96
2 41 0.0058 0.36 12.3 4.2 1 23 38 61 38 61 0.97
3 41 3.8 2.4e+02 3.4 1.4 3 23 70 90 68 90 0.95
4 41 0.0019 0.12 13.8 4.0 3 23 98 118 96 118 0.97
5 41 1 64 5.2 2.2 3 23 125 145 123 145 0.95
6 41 0.75 47 5.7 5.8 1 23 151 173 151 173 0.97
7 41 2.5 1.6e+02 4.0 5.4 1 23 179 201 179 201 0.97
8 41 0.11 7.1 8.2 1.5 3 23 209 229 207 229 0.97
9 41 0.18 12 7.6 3.7 3 23 237 257 235 257 0.97
10 41 0.23 15 7.3 2.9 3 23 265 285 263 285 0.97
11 41 0.005 0.31 12.5 4.1 1 23 291 313 291 313 0.98
12 41 0.18 11 7.6 1.7 3 23 321 341 319 341 0.97
13 41 0.00091 0.057 14.8 0.3 2 22 363 383 362 384 0.90
14 41 0.012 0.73 11.4 2.6 3 23 392 412 390 412 0.96
15 41 0.0016 0.099 14.1 2.3 1 23 418 440 418 440 0.96
16 41 0.0045 0.28 12.7 3.2 1 23 446 468 446 468 0.98
17 41 0.0034 0.21 13.1 5.6 1 23 474 496 474 496 0.97
18 41 1.4 87 4.8 3.9 3 23 503 524 501 524 0.92
19 41 0.25 15 7.2 3.8 1 23 530 552 530 552 0.98
20 41 0.042 2.6 9.6 1.2 2 23 587 608 586 608 0.95
21 41 0.0054 0.34 12.4 1.4 1 23 614 636 614 636 0.97
22 41 0.26 16 7.1 3.9 1 23 642 665 642 665 0.97
23 41 1.5 92 4.7 0.1 3 23 695 715 693 715 0.96
24 41 0.044 2.8 9.5 4.7 1 23 721 743 721 743 0.98
25 41 0.00019 0.012 17.0 0.9 2 23 775 796 775 796 0.97
26 41 0.0019 0.12 13.8 4.9 1 23 802 824 802 824 0.98
27 41 0.29 18 6.9 3.9 3 23 832 852 830 852 0.97
28 41 0.023 1.4 10.4 3.5 1 23 858 880 858 880 0.98
29 41 0.22 14 7.4 3.7 1 23 886 908 886 908 0.95
30 41 2.4 1.5e+02 4.1 7.8 1 23 914 936 914 936 0.97
31 41 0.0095 0.59 11.6 2.4 3 23 944 964 942 964 0.98
32 41 0.35 22 6.7 2.0 1 20 970 989 970 991 0.95
33 41 0.027 1.7 10.2 0.1 2 23 1002 1023 1002 1023 0.96
34 41 0.21 13 7.4 3.6 1 23 1029 1051 1029 1051 0.97
35 41 0.35 22 6.7 8.7 3 23 1059 1079 1059 1079 0.99
36 41 0.0025 0.16 13.5 2.6 1 23 1085 1107 1085 1107 0.98
37 41 0.0043 0.27 12.7 4.6 1 23 1113 1135 1113 1135 0.99
38 41 0.047 2.9 9.5 5.5 1 23 1141 1163 1141 1163 0.97
39 41 0.057 3.6 9.2 1.1 1 23 1169 1191 1169 1191 0.97
40 41 0.082 5.1 8.7 3.6 3 23 1199 1219 1197 1219 0.97
41 41 0.032 2 10.0 0.5 1 23 1224 1246 1224 1246 0.96

Sequence Information

Coding Sequence
ATGTTGAAACACACCGGTCAGATGCCGTTCGGTTGTGGCTCTTGTAATTATAAAAGCCGAGATCGCACGGGTTTGAGACGGCACAAGtcaatacacaccggcgagaagccgttcagttgcgatctttgcgattataagtgccgacgATTCTGGAATCTGAAAGTGCACCGCAAGATAAAACATACCGACGCCgtgaagccgttcggttgtgacttTTGCGAATATAGATGCCTGTACGCTGCAAGTTTGAAACGGCACGTGTTAAAGCACAcaggcgagaagccgttcggttgtgacgtgtgcgattataaatgccgaacGCGCTCGAATTTAAAGCAACACAAGTTGAAAcacggcgagaagccgttcggttgcggtttttgcgattttaaatgccgatCGGCCGAAACCTTCAGAAATCACACGGTGATACACGCCGACGCGAAGCCGTTCAGCTGCCGTCTCTGTCACTATAAGTGCGAAAATCTCGTAAGTTTAAAGTGGCACAAGTTGAAGCACACCGGCGGGAAGCCGTACAGTTGTGATTTTTGCGGGTACAAATGCCTGTACGCCACGACTTTCAAGCGGCACAGGTTAAAGCACAtggacgagaagccgttcggttgtgacgtGTGCGATTATAAGTGCGGACAAGTCGGGTATCTGAGGCGACACAAGTtaaaacacaccgacgagaagccgttcggttgtgatctctgcgatcaTAAATGCCGAAGAGCGGCGGATATGAAAAAGCACAAGTTAATACACACCAGCGacaagccgttcggttgtgacctttgcgattataaatgccgtcgAGTCGGAGATATGAAAAAGCACAAATtaaaacacaccggcgagaTGCCGTTCACTTGTGaactctgcgattataaatgccgattGCAGATAACTTTGAAGAGACACGTTCGAAAACACAcaggcgagaagccgttcggttgtgatatgtgcgattacaaatgcccaCAGTTTGCAGGTTTGAAGCAGCACAAGTTGAAACACACCGATGAGAAGGCGATaTGTCAACCGATCCCTAAAGCCGAGCCACTGGACAAGAAAACAATCGTATGCCGAATATGCGATTCTGAATTTAAAACTCGCGCGAATTTGCGCAGGCATATTTGGACACACACAGGCGAGAAGCCGCTGGCCTGTAACCTTTGCGAATTCAAATGCCGACAGCTCGGGAATCTAAAGCAACACAGGCTAACGCACACCGTCGAGAAGCCGTTcacttgtgatctttgcgattccAAATTCCGATATCTCGGAAATTTAAAGAGGCACAAGTCGCAACACACCGATGataagccgttcagttgtgacctttgcgactATCAATGCCGCCAGCTCGTGAATCTGAGAACGCATAAGCTAACGCACACGGGTGAGAAGCCGTTctgttgtgacctttgcgattataagtgccgccAGCCCGGAAATTTGAAGCAGCACAGGTTGAAAcacggcgagaagccgttcggttgcagtcattgcgattataaatgccgatcAGGTAAAACTTTGGAAAATCACGTGACGTTGTCACACACCGACGCGAAGCCGTTCACTTGTGGACTTTGCCATTATAAATGCGAAAATCTCGTCGGTTTAAAGTGGCACAAGTTGAAACACACCGGCGGCAAGCCATTCGCTTGTGACTTTTGCGAATATAAATGCCTATACGCGACGACTATCAAGCGGCACAGGTTAAAGCACACGGACGAGAAGCAGTTGAGTTGCGGCgcgtgcgattataaatgcggACGAGTCGAATACCTGAAGCGACACATGTTAAGACACACCgccgagaagccgttcagttgtgagcTTTGCGATCACAAATCCCGAAGGGCCGCAGATTTGAAACAGCACAAGTTAATACACGctggcgagaagccgttcagttgcgatctctgcgattataaatgccgaaggGTCGTGGATATGAAGACGCACAAATCAACaaaacacaccggcgagaagttGAATCTTATAAGCGATTATGAATTCCGATTGCAAGTTCACAGGTTAAATCATGCTGACGAGAAGCTGTTCGGTTGCGGGCTTTGCGAGTATAAAAGCCGAAAGGCCGGAGACGTGAAGAAACACGTGTTAATACACACTGGCgaaaagccgttcagttgcgatctttgcgatcaTAAATGCCGGAGAGCCGGAGATATGAGAACGCACAGATTAAGACACACcggtgagaagccgttcagttgcgatgtgtgcgattataaatgtcggccTCAATGGATGACTGAAGTTGGGTCAGTGAAAAAGAAGACCGCCACGTGCCGAATATGTGATTCTAAATTCACGACCCGCGGATATCTGCGCAGACATATtctgatacacaccggcgagaagccgttcagttgtaatctctgcgattacaaatgccgccAGCTCGGAAATCTGAAGAAGCACAAGCTGAAGCACACCGACacgaagccgttcggttgtgatctctgcgattacagGTGCCGACAAGTCGTGCATCTGAAAGAGCACAAGTTGAAGCACACCGGCGAGATGCCGTTCACTTGCGACTTTTGCGATTATAACTGCCGGAAGATTACGAACATCAAAAGGCACATGTTGGTGCACACGGGCGAGAAGCTGTATAACTGTGACgcttgcgattataaatgccgacacgCCGCGACTCTTAAGCAGCACAAGTTAGATCACACTTCCGAGAAGTTGTTCGCTTGTGATCAGTGCGCCTTCAAGTGCCGACGCGTCCACAACTTGCACCGACATAAGCTAACGCACACCGACCAAAAACCGTTCGgttgcgacctttgcgattataaatgccgacagatCGATGAATTGAAACGACATAagctaacgcacaccgacgagaagccgttcagctgtgacCTTTGCGTTTATAAATGCAGAGAGCTCGGTAATTTGAAACGGCACagATACCAATGGGTTAAGCCGGCGAATAAGAAAACAAACGTATGCCGGATATGTAATTCCGAGTACGCGTCTCGCGCGTACTTGCGCAGCCACATtctgatacacaccggcgagaagccgttcagttgcgacctttgcgattacaaatgccgaagCCTCGTGCGCTTGAAAGAGCACAAGCTGAAGCACAGCGACGAGAAGCCGCTCGgttgtgacctctgcgattacaaatgccgccACCTCTCGAGCTTGAAACACCACAAACTAACGCACACCGACGGAAAACCGTTCAGctgcgacctttgcgattataaatgccgagtACTCGCGAACTTGAAGTATCACATGTTGAAGCACACCGACGAAATGCCGTACACttgcgacctctgcgattataagtgccggcAAGTCGGGCATTTGAAAGAGCACAGGCTGACGCACACCGATGAAAAACCGTTCAGCTGtaacctttgcgattataagtgccgacaAGTGAGGTACTTGAAGAAGCACAAGCTGTCGCACACCGACAGAaaaccgttcagctgtgacGTTTGCGATTACAAGAGCCAAAAGCTCGGAGGTTTGAAGCGGCACAAGCtaaagcacaccgacgagaagccgttcggttgcgaTCTATGCGATCATCGATGCCGGGAACTcggaaatttgaaaaagcacaGGCTAATCCACGCTGAGAAACTATTCAGATGTAATCTTTGCGATTGCGAGTTCCGAGCAATTCGAGCTTTAGAAAGGCACGTGgtgatacacaccggcgagattAAATTGGAAACGGCGTAG
Protein Sequence
MLKHTGQMPFGCGSCNYKSRDRTGLRRHKSIHTGEKPFSCDLCDYKCRRFWNLKVHRKIKHTDAVKPFGCDFCEYRCLYAASLKRHVLKHTGEKPFGCDVCDYKCRTRSNLKQHKLKHGEKPFGCGFCDFKCRSAETFRNHTVIHADAKPFSCRLCHYKCENLVSLKWHKLKHTGGKPYSCDFCGYKCLYATTFKRHRLKHMDEKPFGCDVCDYKCGQVGYLRRHKLKHTDEKPFGCDLCDHKCRRAADMKKHKLIHTSDKPFGCDLCDYKCRRVGDMKKHKLKHTGEMPFTCELCDYKCRLQITLKRHVRKHTGEKPFGCDMCDYKCPQFAGLKQHKLKHTDEKAICQPIPKAEPLDKKTIVCRICDSEFKTRANLRRHIWTHTGEKPLACNLCEFKCRQLGNLKQHRLTHTVEKPFTCDLCDSKFRYLGNLKRHKSQHTDDKPFSCDLCDYQCRQLVNLRTHKLTHTGEKPFCCDLCDYKCRQPGNLKQHRLKHGEKPFGCSHCDYKCRSGKTLENHVTLSHTDAKPFTCGLCHYKCENLVGLKWHKLKHTGGKPFACDFCEYKCLYATTIKRHRLKHTDEKQLSCGACDYKCGRVEYLKRHMLRHTAEKPFSCELCDHKSRRAADLKQHKLIHAGEKPFSCDLCDYKCRRVVDMKTHKSTKHTGEKLNLISDYEFRLQVHRLNHADEKLFGCGLCEYKSRKAGDVKKHVLIHTGEKPFSCDLCDHKCRRAGDMRTHRLRHTGEKPFSCDVCDYKCRPQWMTEVGSVKKKTATCRICDSKFTTRGYLRRHILIHTGEKPFSCNLCDYKCRQLGNLKKHKLKHTDTKPFGCDLCDYRCRQVVHLKEHKLKHTGEMPFTCDFCDYNCRKITNIKRHMLVHTGEKLYNCDACDYKCRHAATLKQHKLDHTSEKLFACDQCAFKCRRVHNLHRHKLTHTDQKPFGCDLCDYKCRQIDELKRHKLTHTDEKPFSCDLCVYKCRELGNLKRHRYQWVKPANKKTNVCRICNSEYASRAYLRSHILIHTGEKPFSCDLCDYKCRSLVRLKEHKLKHSDEKPLGCDLCDYKCRHLSSLKHHKLTHTDGKPFSCDLCDYKCRVLANLKYHMLKHTDEMPYTCDLCDYKCRQVGHLKEHRLTHTDEKPFSCNLCDYKCRQVRYLKKHKLSHTDRKPFSCDVCDYKSQKLGGLKRHKLKHTDEKPFGCDLCDHRCRELGNLKKHRLIHAEKLFRCNLCDCEFRAIRALERHVVIHTGEIKLETA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-