Pinq024277.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47540391-47543212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.04 2.5 9.7 5.4 1 23 10 32 10 32 0.98 2 18 0.013 0.81 11.2 2.2 1 23 41 63 41 63 0.99 3 18 0.00058 0.037 15.4 0.3 1 23 69 91 69 91 0.98 4 18 0.0024 0.15 13.5 3.4 1 23 118 140 118 140 0.97 5 18 0.00021 0.013 16.9 2.2 1 23 145 167 145 167 0.98 6 18 0.0004 0.025 16.0 0.4 1 23 173 195 173 195 0.98 7 18 0.00016 0.01 17.2 3.6 1 23 201 224 201 224 0.95 8 18 0.00052 0.032 15.6 1.2 1 23 232 254 232 254 0.97 9 18 0.0017 0.11 14.0 5.4 1 23 316 338 316 338 0.98 10 18 0.00037 0.023 16.1 3.3 3 23 346 366 345 366 0.99 11 18 0.083 5.2 8.7 5.9 1 23 372 394 372 394 0.97 12 18 0.0026 0.16 13.4 1.5 3 23 402 422 400 422 0.98 13 18 0.00027 0.017 16.5 4.1 1 23 428 451 428 451 0.97 14 18 1.1e-05 0.00068 20.9 2.9 1 23 507 529 507 529 0.98 15 18 0.044 2.7 9.5 0.5 1 23 535 557 535 557 0.96 16 18 0.0011 0.066 14.6 1.3 2 23 564 585 563 585 0.97 17 18 0.0001 0.0062 17.9 1.2 3 23 593 613 591 613 0.97 18 18 0.00041 0.026 15.9 2.5 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- ATGTTGACGCATACCGGCGAGGAGTTATTCAGATGCGTTCTTTGCAATTACAGATGCCAATACCACGACGATTTAAGGCGACACGTGCTTACACATACCGTCGCCGTCGCCGGGAAACCGTTCAAATGTACCGTTTGTGCTTACGAATGCGACAGACGCGCGTATTTGACCCTGCATACCttaacacacaccggcgagaagccgttcagttgcgatctttgcgattacagggGTCGTTCCGGCGGCAATTTGAAAAAGCACATGTTGATACACACTGAGGAGAATCCGAGGCGGCGCGCGGAATTGCAACGGTACAATTCAAAGAAGCGCGTCATGGAAACGTCGTCGCCGTTCAACTGCGTCTTCTGCGGGTACAAATGCCGATTTCAAGAGGATCTCTCACGGCACTTGCTGACTCACGGGGGTAAACCGTTCGAATGCGACGCGTGCGGGTACAAATGCAAGAAGCGTTCGGACTTGAAGCGGCACGTGGCGACGCACACCgtcgagaagccgttcagctgtgatctgtgcgattacCGGAGTCGACTGGCCGGGAATTTGAAACTGCACATGTTGACGCAcacgggcgagaagccgttcagttgcaaATCTTGCGGTCAGAAATTTAGGCGAACGGATCACGTGAAGCGGCACATGTTGCTGTTGCACGCGGAAGACGCAAAGCGACTCTATAATTGCGCTTTTTGCGATTATAAAGGCCGAAGGCCCGAGGATTTGAAACGGCATATGTTCAAACACACCGGAGATAAGCCGTTCATTTGTGATGTCTGTTTATACAGATGTCACCCAATTGTCGAAATTGACAGCGTGAACAAAAGAACACTTGCTCACCGGAAATTTAAAGCGCAGAATCCCCCACCCGAACATGTACCGATACATACCGGCGAAGATCCTAAAACGCACTCGCTCGGTCCAAAGCCGTTCACGTGCAAACTGTGCCTATACACATGCGCGAAGAGCTCGCATTTGAAGCAGCACATGCtgatacacaccgacgagaaaccgcaCGGCTGCAGCCTGTGCAGTTACAAATGCCGAACTTCCGGCAATTTAAAACAGCACATGATGACGCACACCGGCGTGAAATCGTTCAGCTGCGATCTCTGCGCGTACAAGTGCCGACACCGCGCGTCTTTGAGGATGCACATGTTcaaacacaccggcgagaatcCGTACGGTTGCAGCCAGTGCGAGTACAAGTGCCGGATTCCTGCGAGCTTGAAGCGGCACATGTTAACGCACACGGAAGAGAAGCTGTTCGCCTGTGACTTTTGCGATCACAAGTACCGACAGCCTCATGGTTTGAGAAAGCACATGTTGACGACGCACCGGCGAGAACAAACAATCGAACAGAAATGTCATGGTCGTTGTCAAAACTGCGCGGAACGTGGAGTGTTTGATGTTCATGTGGTGAAACACACCGGAGAGAAGCCGTTCGGCGATTTTAAGAGTCGATATCGTAACCACCTGTCTTTACATGCCGGCGAAAAACGATTCACTTGTGGCGTTTGCGGTAAGAAGTGTCGGACTAACGCAGAGCTGAAACGACACAAGTTAACACACACCAGCGCACAGCCGTTTAgatgtgatctttgcgatttcaCACGTCGTGATCCTTCTAGCATAAAGGAACACAAATTAGCTCACGCGGGCAAGGCGGCGATCAGCTGTGGCCTTTGCGATTTCAAGTGCGCAAAAGCGTCGTACTTGAGACAGCACATGTTAACGCATTCCGGCGAGAAACCTTACGGTTGCAGCGTTTGCGATTCCACGTTCAGGCAATCCGGTCATTTGAAGTACCAcatgttaatacacaccggcgagaagccgttcagttgtgatgttTGTGATTACAAGTGTCGATCCGGCGGAGATCTAAAGAAGCACATGTCGAAGCACGCCAAGCCGTTTTGGATTTAA
- Protein Sequence
- MLTHTGEELFRCVLCNYRCQYHDDLRRHVLTHTVAVAGKPFKCTVCAYECDRRAYLTLHTLTHTGEKPFSCDLCDYRGRSGGNLKKHMLIHTEENPRRRAELQRYNSKKRVMETSSPFNCVFCGYKCRFQEDLSRHLLTHGGKPFECDACGYKCKKRSDLKRHVATHTVEKPFSCDLCDYRSRLAGNLKLHMLTHTGEKPFSCKSCGQKFRRTDHVKRHMLLLHAEDAKRLYNCAFCDYKGRRPEDLKRHMFKHTGDKPFICDVCLYRCHPIVEIDSVNKRTLAHRKFKAQNPPPEHVPIHTGEDPKTHSLGPKPFTCKLCLYTCAKSSHLKQHMLIHTDEKPHGCSLCSYKCRTSGNLKQHMMTHTGVKSFSCDLCAYKCRHRASLRMHMFKHTGENPYGCSQCEYKCRIPASLKRHMLTHTEEKLFACDFCDHKYRQPHGLRKHMLTTHRREQTIEQKCHGRCQNCAERGVFDVHVVKHTGEKPFGDFKSRYRNHLSLHAGEKRFTCGVCGKKCRTNAELKRHKLTHTSAQPFRCDLCDFTRRDPSSIKEHKLAHAGKAAISCGLCDFKCAKASYLRQHMLTHSGEKPYGCSVCDSTFRQSGHLKYHMLIHTGEKPFSCDVCDYKCRSGGDLKKHMSKHAKPFWI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -