Pinq000222.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069869.1:4403497-4404882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 0.93 11.0 0.2 2 22 68 88 67 88 0.94 2 12 1.6e-05 0.001 20.4 1.5 1 23 95 117 95 117 0.97 3 12 5.1e-07 3.2e-05 25.1 0.7 1 23 123 145 123 145 0.98 4 12 1.2e-05 0.00077 20.7 1.0 1 23 151 173 151 173 0.99 5 12 0.017 1 10.9 3.8 1 20 179 198 179 201 0.95 6 12 1 63 5.3 8.9 1 23 208 230 208 230 0.98 7 12 0.00035 0.022 16.1 1.4 1 23 237 260 237 260 0.95 8 12 1.4e-07 8.8e-06 26.8 4.1 1 23 266 288 266 288 0.98 9 12 1.1e-05 0.00069 20.9 0.9 1 23 294 316 294 316 0.97 10 12 1.7e-06 0.0001 23.5 0.2 1 23 322 344 322 344 0.98 11 12 0.0001 0.0065 17.8 0.6 1 23 350 372 350 372 0.94 12 12 0.0068 0.42 12.1 0.5 1 23 378 401 378 401 0.95
Sequence Information
- Coding Sequence
- ATGCCGAAGTGCACTGAAAATTCCACATTTAAAGAAGAGGACGACGACTCCGACGAACCCGAGGTGGAAGCAACAAACATGAAACTAGAAGCAATAGACTTGAAAGAGCATTTTAACACGAACTGCCAAGAAAGTGAAAGTTTCAGCAGCTTGAAGAAGGAAGAGATTTCCAACAAGGAAAGAAGCGGTGACCAAAACGTAGAGTGTAAAGtgtgcaacaatttttttgaatccGAGTTCGATCTACGAGTACATTTAAAGAAGCCGGCCCAAGATAAAACGTTCGCATGCTGCGGCTGCCCCAAAGCTTTTCGAGACATGTCACGGCTCAACATACACATGCGGAAGCACACGGGTGAAAAGCCGTTCGTTTGTAAAACTTGCGGCAAGGGTTTCTCAATAAAAAGTAACTTAAGTAAGCATGTTCGAATACACACCGGTGAGAGAAGATATGAATGTGATGTTTGCGAAAAAAGGTTCATACAATTCGCGCACTTAGAGGACCATCTAAAAATGCACACTGGCGAGCGTCCTTTTAAGTGTTCTTACTGCGATAGCGCATTCGTGAGTACATCAAGACTAAAGAAGCACGTGTCTTGTCATGATGGTTCGGATGAAATCTATCGGTGTTGTGACTGCTGTAAAAAGTTTCCAACAATTAATCAATTGCGAAGCCACGTCTGCAGACATAAAGGAGAGAAAGCCCCATTTCTATGTAAGGGTTGTGATCAGAAATTCGAAACGCGCTTGGACCTTAAAAATCACGTAAAACGTCAGCATAGCGGTGATAAAATTTACAAATGCCACATCTGCGGAAAAAGTTTCGATAACAATACCTATTTAAATAAGCACATAAGATTTCATTCAGGTCTCAAGCCGCACGTTTGTGAGATATGTAAAAAAGGCTTCTCGGGTAAGCAGAACTTGAAACAGCATTTGATCATACATTCGGGACAAAAACCGTTCTCCTGCGACGTGTGCGGCAAAGGATTTCCGTCGTTGGGAAACATGAAGCGCCACACGAGGATACACACCGGAGTGAAACCGTATATCTGCAAGACGTGTGGTAAATCTTTTGGATACACATCGACTTTGAAGGATCACGAGGCGTTACATCCGACCATAAACGAATTTCAATGTCAGTTTTGCGCGGAAAGTTTCGCGGACAGTCGTTTTCTTTCAAACCACGTGACGATCATGCACCCCGAAGTTATCGAACCTGTGAGACTCAATGCGTTGAGTCATCACTTGCGCCCCATAGAATCTGTGAATATCAAGTGTGAAGTGGGTGAAGCTGCcgtaaatgaatttaaaacagaaaGCAATTAA
- Protein Sequence
- MPKCTENSTFKEEDDDSDEPEVEATNMKLEAIDLKEHFNTNCQESESFSSLKKEEISNKERSGDQNVECKVCNNFFESEFDLRVHLKKPAQDKTFACCGCPKAFRDMSRLNIHMRKHTGEKPFVCKTCGKGFSIKSNLSKHVRIHTGERRYECDVCEKRFIQFAHLEDHLKMHTGERPFKCSYCDSAFVSTSRLKKHVSCHDGSDEIYRCCDCCKKFPTINQLRSHVCRHKGEKAPFLCKGCDQKFETRLDLKNHVKRQHSGDKIYKCHICGKSFDNNTYLNKHIRFHSGLKPHVCEICKKGFSGKQNLKQHLIIHSGQKPFSCDVCGKGFPSLGNMKRHTRIHTGVKPYICKTCGKSFGYTSTLKDHEALHPTINEFQCQFCAESFADSRFLSNHVTIMHPEVIEPVRLNALSHHLRPIESVNIKCEVGEAAVNEFKTESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -