Pinq024426.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49507129-49513914[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0041 0.26 12.8 4.3 2 23 15 36 14 36 0.96 2 34 0.0026 0.16 13.4 1.0 2 23 43 64 42 64 0.97 3 34 0.057 3.5 9.2 2.4 2 23 71 93 70 93 0.96 4 34 0.0045 0.28 12.7 4.2 1 23 119 141 119 141 0.98 5 34 0.01 0.62 11.6 1.5 1 23 147 169 147 169 0.97 6 34 0.17 11 7.7 3.9 3 23 177 197 175 197 0.95 7 34 0.035 2.2 9.8 0.4 1 23 203 225 203 225 0.97 8 34 0.0036 0.22 13.0 3.1 1 23 247 269 247 269 0.96 9 34 0.048 3 9.4 3.0 3 23 277 297 275 297 0.97 10 34 0.89 55 5.4 4.6 1 23 303 325 303 325 0.97 11 34 0.015 0.92 11.0 1.4 3 23 333 353 331 353 0.97 12 34 0.003 0.19 13.2 7.9 1 23 359 381 359 381 0.98 13 34 0.03 1.9 10.1 1.0 2 20 388 406 387 408 0.94 14 34 0.0042 0.26 12.8 6.7 1 23 422 444 422 444 0.99 15 34 0.0062 0.39 12.2 3.1 1 23 450 472 450 472 0.97 16 34 0.12 7.8 8.1 6.0 1 23 478 500 478 500 0.97 17 34 0.0011 0.072 14.5 3.7 1 23 506 528 506 528 0.98 18 34 0.052 3.3 9.3 4.2 1 23 534 556 534 556 0.97 19 34 0.011 0.67 11.5 3.9 3 23 564 584 562 584 0.97 20 34 0.17 11 7.7 6.3 1 23 590 612 590 612 0.97 21 34 0.0042 0.26 12.7 2.9 1 23 618 640 618 640 0.97 22 34 0.00088 0.055 14.9 4.4 1 23 646 668 646 668 0.98 23 34 0.033 2.1 9.9 1.4 1 23 674 696 674 696 0.97 24 34 0.27 17 7.0 3.2 2 23 703 724 702 724 0.96 25 34 0.00016 0.01 17.2 1.6 1 23 730 752 730 752 0.98 26 34 0.005 0.31 12.5 1.7 1 23 758 780 758 780 0.96 27 34 0.047 3 9.4 2.4 2 23 787 808 786 808 0.96 28 34 4.8 3e+02 3.1 0.1 10 23 819 832 815 832 0.89 29 34 0.0038 0.24 12.9 3.0 1 23 838 860 838 860 0.98 30 34 6.8 4.2e+02 2.7 9.1 1 23 866 888 866 888 0.96 31 34 1.2 73 5.1 3.2 3 23 896 916 894 916 0.97 32 34 0.00072 0.045 15.2 1.6 2 23 923 944 922 944 0.96 33 34 0.025 1.6 10.3 4.9 1 23 950 972 950 972 0.97 34 34 0.41 26 6.5 6.4 2 23 979 1000 978 1000 0.96
Sequence Information
- Coding Sequence
- ATGAAAATACACAAGTTACTACACACAGGCGAGAAGCCGTTGAGCTGTGACGTCTGTGATTACAAGTGCCGGCGAGCCGCACACCTGAGACAGCACAAGTTGAAGCACAGCGACGAGAAGCCGTCAGTTTGTGACGTCTGCGATTGCAAATTCCAACGGCTGGAAGATCTGAAACTGCACGTCTTAACGCACACCGGTGAGAATCCTTTGCGctgcgacctctgcgattataaatgccgacttGCCGCAAACATGAAACAGCACAGGCTCACGAGGCACACCGACAAAAAGCTGTTCAGCTGCAagCGCGGAAGCTTGAAATACCACttgttaatacacaccggcgagaaaccgttcagctgtgatctctgcgattacaagtgccgacTTGCTTCGTATTTAAAACGCCACAGGCtgaaacacaccgacgagaagccgttcgtctgcgatctttgcgattacaagtgccgatATCTCGGAAGCTTGAACGACCACaagttaatacacaccggcgagaagccgttcggctgTGGCCTTTGCAGTTATAAATGCCGGACGTCTCGGGAATTGAAGCGGCACAAAGTGAAGCATACgagcgagaaaccgttcagctgcGCGTTTTGCGATTACAGAAGTGGACAGCTGGGAGAGTTGAAGCGGCACGCGCTGAAACATACCGACGATAAAGACCTAACatCTGGACGGATCCGACGTTCCAAATTCGCGACCGAGAAAACATTCGAATGCCGCACATGCGGTTCTAAATTTAAACGCGGCTCGCACCTGCGCAATCACGTTTtcatacacaccggcgagaagccgttcggttgcgaCCTTTGCAAGTATAAATGCCGGGACGCCAGAGCTTTGAAGAAGCACAGGTTGAatcacaccgacgagaagccgttcgcttgcgacctctgcgattacaagtgccgagAGTTCAGGCACATGGAGGACCACAGGTtgacacacaccgacgagaagccgttcggttgcgaCGTATGCGATTACAAATGCAGACTGGTCGGAAACTTGAGGAAGCACATGGTGAAACACGCGgccgagaagccgttcagctgtgatctttgcgagTACAGGTGTCGACATCACGTCAACCTGAAGAGGCATATGTTGACGCACAGCGGCAAGAAGCCGCTGCGCTGTGCCGTTTGCGATTTCAAGTGCCGCGATCCTACGGCTTTGAAACGGCACAGATACCAATGGATCGTCCCCAAAGTAGAAACAATCGATAAAGAGACATTCCAATGCCGATTATGCGACTTCACGTGTAAATACCGCTCCTTCCTGCGCAGGCATCAATTAACACATACCGGTGAGAAGCCGTACAGTTGTAAACTCTGCGATTACAAGAGCCGACAGCTCGGGCATTTGAGACAGCACGAGCtgaaacacaccgacgagaagccgttcagttgcgacgactgcgattataaatgccggcacCTCCAGAGCTTCAAGCTGCATaagttaatacacaccggcgagatgCCGTTTAGCTgtaatctttgcgattataaatgccggcggCTCGAGCAATTAAAGGCGCACACGTTGAAACACACAGGCGAGAGGCCGTTCAGctgcgacctctgcgattataagtgccgacgGATCGGCGATTTTAAGCAGCACAAGCTGAAACACACCGGAGAGAAGCCGTTCggctgcgatctttgcgattataaatgccgacggtCCGAACATCTGAAAGTGCACAAgttaatacacaccgacgagaagccgttcagttgcgacctctgcgattacaagtgccggcTGCGCACGCATTTGAAGCAGCACGCGTCGAAGCACAGCAGCGAGAGGCCGTTTAgttgcgacctttgcgattataagtgtcgGCGCATCGAGCATTTGCGAGTGCACGTTTTAATACACACCGAtcagaagccgttcagttgtgacgtctgcgattacaagtgccgagAGCGCAGCAGTTTGAAGCGGCACAAgctaacgcacaccggcgagaagccgtttagctgcgatctttgcgattatagagGCCGATCTCTCAAAAGTCTGAAGTTGCACAAGTTgaggcacaccgacgagaagccgttgaGCTGCAGCTTTTGCGATTTCAAGTGCCGGCAGATCGGCAGCTTGAAAACGCACGAGCTGAAACACACCGGCGCCAAGCCGTTCGtatgtgatctctgcgattacagTTGCCGGGGGCGCGGCAATTTGAAACGGCACAGGTTAATACACACCGATGAGAAGAAGTTCTGTTGCGATATTTGCGGTTATACAGGTCGATATCTGAAGAGCTTGAAGCTGCACATGTTGGatcacaccggcgagaagccgttgagctgtgatctttgcgattacaagtgcaaGGAGCTCGGCAACTTGAAAATGCACAAGTTGAAACACttcgacgagaagccgttcggttgtgacgtATGTCGACGGGCCGACAGCCTCAAACAGCACAAGTTAAAACACACCGGCGACAAGCCGTTTCGctgcgatctctgcgattataaatgcggACGGTCCGAATACCTGAGAGTGCACAAGCTAACACActccgacgagaagccgttcagttgcgatctttgcgattacaaatgccggcTGCATTGTAATTTGAAACAGCACAACTTaaagcacaccggcgagaaaccgttcggttgtgacctctgcgattataaatgtcggcgGATCCAACGTTTGAAGGTGCACAAGTTGAAGCACACGGACGAGAAGCCGCTCGTTTGCGATCTTTGCGAGTACAAGTGTCGAGACCGCGCGAATTTGAAGCGGCACAGGCTGATCCACACCGGCGAGAATCCGTACAATTGTCgcctctgcgattataagtgccggcAGTTTCAGAACTTGAAGGCGCACACGCTAAGGCACACCGACGAAAAGCCGTTGCAGTGTGATCGTTGCGATTTCAAATGTCGGCACGCTTTGTCTCTGAAGCGGCACAAGTTGAAACATCTGCAACACGAATCGAAAGAAACGCGATGA
- Protein Sequence
- MKIHKLLHTGEKPLSCDVCDYKCRRAAHLRQHKLKHSDEKPSVCDVCDCKFQRLEDLKLHVLTHTGENPLRCDLCDYKCRLAANMKQHRLTRHTDKKLFSCKRGSLKYHLLIHTGEKPFSCDLCDYKCRLASYLKRHRLKHTDEKPFVCDLCDYKCRYLGSLNDHKLIHTGEKPFGCGLCSYKCRTSRELKRHKVKHTSEKPFSCAFCDYRSGQLGELKRHALKHTDDKDLTSGRIRRSKFATEKTFECRTCGSKFKRGSHLRNHVFIHTGEKPFGCDLCKYKCRDARALKKHRLNHTDEKPFACDLCDYKCREFRHMEDHRLTHTDEKPFGCDVCDYKCRLVGNLRKHMVKHAAEKPFSCDLCEYRCRHHVNLKRHMLTHSGKKPLRCAVCDFKCRDPTALKRHRYQWIVPKVETIDKETFQCRLCDFTCKYRSFLRRHQLTHTGEKPYSCKLCDYKSRQLGHLRQHELKHTDEKPFSCDDCDYKCRHLQSFKLHKLIHTGEMPFSCNLCDYKCRRLEQLKAHTLKHTGERPFSCDLCDYKCRRIGDFKQHKLKHTGEKPFGCDLCDYKCRRSEHLKVHKLIHTDEKPFSCDLCDYKCRLRTHLKQHASKHSSERPFSCDLCDYKCRRIEHLRVHVLIHTDQKPFSCDVCDYKCRERSSLKRHKLTHTGEKPFSCDLCDYRGRSLKSLKLHKLRHTDEKPLSCSFCDFKCRQIGSLKTHELKHTGAKPFVCDLCDYSCRGRGNLKRHRLIHTDEKKFCCDICGYTGRYLKSLKLHMLDHTGEKPLSCDLCDYKCKELGNLKMHKLKHFDEKPFGCDVCRRADSLKQHKLKHTGDKPFRCDLCDYKCGRSEYLRVHKLTHSDEKPFSCDLCDYKCRLHCNLKQHNLKHTGEKPFGCDLCDYKCRRIQRLKVHKLKHTDEKPLVCDLCEYKCRDRANLKRHRLIHTGENPYNCRLCDYKCRQFQNLKAHTLRHTDEKPLQCDRCDFKCRHALSLKRHKLKHLQHESKETR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -