Pinq024390.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49049140-49055434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0031 0.19 13.2 1.3 1 23 22 44 22 44 0.97 2 20 0.00028 0.017 16.5 4.1 1 23 50 72 50 72 0.98 3 20 0.045 2.8 9.5 1.8 2 23 79 100 78 100 0.94 4 20 0.023 1.5 10.4 2.2 2 23 107 128 106 128 0.97 5 20 0.12 7.8 8.1 1.3 3 23 136 156 134 156 0.95 6 20 0.011 0.72 11.4 4.3 2 23 163 184 162 184 0.97 7 20 3.5e-05 0.0022 19.3 4.2 1 23 190 212 190 212 0.98 8 20 1.3 80 4.9 1.5 1 16 218 233 218 235 0.86 9 20 0.13 8 8.1 1.7 3 23 247 267 247 267 0.98 10 20 3e-05 0.0019 19.5 0.4 3 23 279 299 277 299 0.96 11 20 3.5e-05 0.0022 19.3 1.4 3 23 307 327 305 327 0.98 12 20 0.00015 0.0091 17.4 0.4 2 23 352 373 351 373 0.97 13 20 0.0078 0.49 11.9 2.3 1 23 379 401 379 401 0.98 14 20 0.0014 0.085 14.3 2.5 1 23 413 435 413 435 0.97 15 20 0.026 1.6 10.3 2.0 1 23 444 467 444 467 0.95 16 20 0.00023 0.015 16.7 1.3 1 23 475 497 475 497 0.98 17 20 0.00045 0.028 15.8 2.7 1 23 505 527 505 527 0.97 18 20 0.0033 0.21 13.1 2.3 1 23 533 555 533 555 0.98 19 20 0.00022 0.014 16.8 3.8 1 23 562 584 562 584 0.98 20 20 0.0042 0.26 12.8 8.9 1 23 590 612 590 612 0.98
Sequence Information
- Coding Sequence
- ATGAACAGGCGCAAAAGATCGGCGCAAAGGAGTCGACGTTGCAGGGGCGCCGCCAGGAAGCAGCACGTCTGCGCCATCTGCGGCTCCAAATACATCCACGCCACCGGCTTAAAGCTGCACATGTacacgcacaccggcgagaaaccgtttcgGTGCAACCTCTGCGACTACAAGTGCGTTCAGTCTAACTCGCTCAAGAAGCACATGTacatacacaccggcgagaagccgctGAAGTGCGAGATTTGCAGCTACCGCTGCAAGTACGGGAGCGAGCTGAGGACGCACGCGTTCGTCCACGCCAAGGGCAACATACTGAAGTGTTACTTCTGCCCATTCAGGTGCGTGCGCGACGAGGACCTGACGGACCACATGAACAAACACACCGACGGCAAGGAGCTCGCGTGCAATTTCTGCGAGTACAAGTGCACCGGAACCGATAACATGAAGCTGCACATGCTCGGACACAATCGGGACATGTACATAACGTGCCAgctctgcgattataagtgcatGAAGGTCAGCAACTTGAGAGTGCACATGCacacgcacaccggcgagaagcccttCAAGTGCAACAAGTGCGATTACAAGTCGGCCAATCCGTCGACTCTCAAGCGACACATGCACAGGCACGTCGAGGACAAGCCTTTTAAATGCTCCGATTGCGATTATCAATGCATACGGGTCAGTTTATTCCAAGAAGGAGTCCAACTGGAGGACGAAAGAGTTTCCGGATGTGACGTATGCGGCGCCGAATGCAAAACTCCCGGTTACACACACAAGCACATGCTGCTACATaccggcggcggtggcggcgagAAACCGCTCGATTGCAATCTTTGCGGTCGCAAATTCCGATCGCTCGGAAACCTAAACCAGCACGGgttgacgcacaccggcgagaaaccgttcggctgCGAACTTTGCGATTGTAACTTCCGAAGAGCCGGGAACTTGAAAGAGCACATGCTGACGCACAACGACGAAAAACCGTTCGGTTGCAACCTaTTTCAAGCGGCTACTGCAATTCTGGACGAAGAAAGCGCATCCCAGTGTTCCGTTTGCGGTTTGAAATTTTCGTCGCGCGCGTACGTACGCAAGCACCTGCTGATACACAcgggcgagaaaccgttcagctgcgatctctgcgattacaaggCCCGAATGTTCGGTCATCTGAAACGGCACATCTTGAAACacaccggcggcggcggcggcggcgccgtTAAGTCGTTCGCttgcgacctctgcgattacaaatgcagAACGCTCGGGAAATTGAAGCGGCACGAGCTGACGCACACCGGAGAGAAGCCGCCGGCGCCGTTCAGctgcgacctttgcgattacacgTGCCGGGAGACGATCAAGCTCAAGGAGCACATGCTTCTCACGCACCTCGACGACGGCGAGAAGCCCTTCAGCTGCGAGATTTGCGATTATAGGTCGCGCTTGTTCGGAAACTTAAAGCGGCACATGCTCAAACACACCGGCGGCGGCAAGAGGCCTTTCAGctgtgacctctgcgattataagtgccgacaGCGCGGAAATCTCAGACTGCACAGgctgatacacaccggcgagaagccgtttagTTGTCAactctgcgattataagtgccgagaGGCGGGGAAATTGAAGCGGCACGCGCTGACGCACTTCgacggcgagaaaccgttcagctgcgacctctgcgattacaaatgccgacagtCCGGGACTATGAAGCGGCACATgttgacgcacaccggcgagaaaccgttcagttgcggCGTTTGCAATTACAAATGTCGACAATCCTGCCACTTGAATAGGCACATGTTGAAACATGTCGGTGAAAATACTTCGAGCGCTGCAGACATTTTTAAACTTGAACCAGATTTTTag
- Protein Sequence
- MNRRKRSAQRSRRCRGAARKQHVCAICGSKYIHATGLKLHMYTHTGEKPFRCNLCDYKCVQSNSLKKHMYIHTGEKPLKCEICSYRCKYGSELRTHAFVHAKGNILKCYFCPFRCVRDEDLTDHMNKHTDGKELACNFCEYKCTGTDNMKLHMLGHNRDMYITCQLCDYKCMKVSNLRVHMHTHTGEKPFKCNKCDYKSANPSTLKRHMHRHVEDKPFKCSDCDYQCIRVSLFQEGVQLEDERVSGCDVCGAECKTPGYTHKHMLLHTGGGGGEKPLDCNLCGRKFRSLGNLNQHGLTHTGEKPFGCELCDCNFRRAGNLKEHMLTHNDEKPFGCNLFQAATAILDEESASQCSVCGLKFSSRAYVRKHLLIHTGEKPFSCDLCDYKARMFGHLKRHILKHTGGGGGGAVKSFACDLCDYKCRTLGKLKRHELTHTGEKPPAPFSCDLCDYTCRETIKLKEHMLLTHLDDGEKPFSCEICDYRSRLFGNLKRHMLKHTGGGKRPFSCDLCDYKCRQRGNLRLHRLIHTGEKPFSCQLCDYKCREAGKLKRHALTHFDGEKPFSCDLCDYKCRQSGTMKRHMLTHTGEKPFSCGVCNYKCRQSCHLNRHMLKHVGENTSSAADIFKLEPDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -