Pinq024415.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49425111-49431106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.1 68 5.2 3.7 3 23 16 36 16 36 0.99 2 24 0.011 0.71 11.4 6.7 1 23 42 64 42 64 0.97 3 24 0.0009 0.056 14.9 0.8 1 23 70 92 70 92 0.97 4 24 7.1e-05 0.0045 18.3 0.6 1 23 98 120 98 120 0.98 5 24 0.23 14 7.3 3.2 1 23 127 149 127 150 0.95 6 24 0.0048 0.3 12.6 3.4 1 23 155 177 155 177 0.98 7 24 0.00028 0.017 16.5 4.0 1 23 183 205 183 205 0.97 8 24 0.071 4.5 8.9 6.0 1 23 211 234 211 234 0.94 9 24 0.047 2.9 9.5 2.3 3 23 242 262 240 262 0.96 10 24 0.00012 0.0073 17.6 1.5 1 23 278 300 278 300 0.98 11 24 0.00032 0.02 16.3 1.3 3 23 308 328 306 328 0.97 12 24 0.024 1.5 10.4 0.2 3 23 336 356 334 356 0.98 13 24 0.0039 0.24 12.9 3.7 2 23 363 384 362 384 0.96 14 24 0.0016 0.1 14.0 1.3 1 23 390 412 390 412 0.97 15 24 0.01 0.64 11.5 4.1 3 23 420 440 418 440 0.97 16 24 0.041 2.5 9.7 2.8 1 20 446 465 446 467 0.94 17 24 0.65 41 5.9 1.1 2 23 482 503 482 503 0.96 18 24 0.001 0.064 14.7 4.7 1 23 509 531 509 531 0.98 19 24 0.00072 0.045 15.2 4.0 3 23 539 559 537 559 0.98 20 24 0.00021 0.013 16.8 3.9 1 23 565 587 565 587 0.98 21 24 0.019 1.2 10.7 1.2 3 23 595 615 593 615 0.98 22 24 0.00024 0.015 16.7 1.7 1 23 621 643 621 643 0.97 23 24 0.0023 0.14 13.6 1.1 3 23 651 671 649 671 0.97 24 24 0.036 2.2 9.8 1.1 3 23 679 700 677 700 0.95
Sequence Information
- Coding Sequence
- ATGACGCAGCACAAGTTAGACCACACCGAAGGCAAGCCGCTcggttgtgacctttgcgattataagtgccgacaGGTCAGGCGCTTGAGAGAACAtaagttaacgcacaccgacgagaagccgtacaattgtgacctttgcgattacaaatgcaaGCGCTCGTGGAGCTTGAAGCACCACAAGTTAAGGCACGAAGACGAACGGCCGTTCGCCTGTGATTTTTGCGATTATAGAAGCCGATATGCTGGGAGTCTGAAACAACACCAGTtgacacacaccgacgagaagccgttccgTTGCGTGCTTTGCGAACGCAAATTCCGTGAGGCTGTCGCTTTGAAACGGCACATGCTCAGACACACCGGCGGAGGGAAcacgttcagttgtgatctttgccaTGTGAACTATCAACAGGTCGCGTCTTTAAAACAGCACGTGACGAGGCACCATCGCGAGAAAAAGTTCAGTTGTGATTTGTGTGATTACAAGTGCAAGATGCTCAGCTCTTTGAAGGTGCACAAGCTAACGCATACTGATAAGAAGCCGTTCAATTGCGAactctgcgattacaagtgccgacaACAAGCCCATCTGAAACTTCACATGTTAATACATAcaggcgagaagccgttcagctgcgaTGTTTGCAGTCATAAATGCCGTGATTTGAGCAAGTTGAAACGACACAAGTTACTaaggcacaccgacgagaagccgtacgGTTGTGATttttgcgattataaaagcCGACATCTTGGATACTTGAAACGACACGAGTTAAAACATAAAGCTTTGCGCAAGCACATTCAcgtacacaccgacgagaagctaTTCACCTGCagtctttgcgattataaagcTCGAAGGCGCACGACTCTCAAGGCTCACAtgctaacgcacaccgacgagaagccgttcggttgcgacctttgcgattacaaatgccgcaGGCGCGGGGATTTGAAAGTCCACATGTTGATACACTCGAGCGAGAAGTCGTTcggttgcgatctttgcgattataaagggCGAAGGCTCGCCGACCTGAAACTTCACGTGTTGACGCACGCGAGCGAGAAGCCGCTCAGCTGCGATcattgcgattacaagtgccgacTTACCGCGAATCTGAAAACTCACATGTTAATACAcacgggcgagaagccgttcagttgtggtctttgcgattataagtgccgaaCCATAGGGAATCTGAAAACTCACGTCTTAATACATacgggcgagaagccgttcggctgCGACCTTTGCAATTATAAATGCCGAGATCTCACGAATCTGAAACGACACAAGTTGCGGCATGGCGGTGAGAAGCCGTACGCTTGTGATTATTGCAATTATAAAAGTCGATATCGTACAAACTTCAACAGGCACAAATATCGCCGAATCCCTAGCAGAAGCAAAACTGCAAACAAGCAGCCAGCCGAATGCCGAATATGTGAATCTAAATTCAGATCGCACGCAATCCTGCgcaatcacattttattacacaccggcgagaagccgtacagttgcgatctttgcgattacaaatgccgacaggCCACACACCTGAAAGGTCACATGTTAAAACACACGGGCGAAAAGCCGTTCGGCTGCAGTCTTTGCGACCACAAGTGCCGAAGAGCCTCGGATCTGAAAGCCCACATGCTGAAACAcacgggcgagaagccgttcacttGCGATCTCTGCGATTTCAAATTCCGCCGGGACGAACACTTGAAACGTCACGTGCTGAAACACAcgggcgagaaaccgttcggttgcgatctctgcgattacagGTGTCGACAGGTTGGACTGTTGAAAGGTCACATGTTGAAGCAcacgggcgagaagccgttcgcttgtagactttgcgattataaatgccgaagaGCTGCGGATTTGAAAGTGCACATGTTGAAACACACCgtcgagaagccgttcggttgtggcctttgcgattataaaagtCGGTATCGCAGCGATTTGAAATCGCACGTGCGAAAGCACGCGGACGAGAGGCCTTTCGGTTGTGATCGTTGCGATTATAGAAGTCGATATCGCGGAAATTTGAACCAGCACAAGTTAATAAAGCACGTGGATGACTCTTAA
- Protein Sequence
- MTQHKLDHTEGKPLGCDLCDYKCRQVRRLREHKLTHTDEKPYNCDLCDYKCKRSWSLKHHKLRHEDERPFACDFCDYRSRYAGSLKQHQLTHTDEKPFRCVLCERKFREAVALKRHMLRHTGGGNTFSCDLCHVNYQQVASLKQHVTRHHREKKFSCDLCDYKCKMLSSLKVHKLTHTDKKPFNCELCDYKCRQQAHLKLHMLIHTGEKPFSCDVCSHKCRDLSKLKRHKLLRHTDEKPYGCDFCDYKSRHLGYLKRHELKHKALRKHIHVHTDEKLFTCSLCDYKARRRTTLKAHMLTHTDEKPFGCDLCDYKCRRRGDLKVHMLIHSSEKSFGCDLCDYKGRRLADLKLHVLTHASEKPLSCDHCDYKCRLTANLKTHMLIHTGEKPFSCGLCDYKCRTIGNLKTHVLIHTGEKPFGCDLCNYKCRDLTNLKRHKLRHGGEKPYACDYCNYKSRYRTNFNRHKYRRIPSRSKTANKQPAECRICESKFRSHAILRNHILLHTGEKPYSCDLCDYKCRQATHLKGHMLKHTGEKPFGCSLCDHKCRRASDLKAHMLKHTGEKPFTCDLCDFKFRRDEHLKRHVLKHTGEKPFGCDLCDYRCRQVGLLKGHMLKHTGEKPFACRLCDYKCRRAADLKVHMLKHTVEKPFGCGLCDYKSRYRSDLKSHVRKHADERPFGCDRCDYRSRYRGNLNQHKLIKHVDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -