Pinq024419.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49466956-49471022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.066 4.1 9.0 6.3 1 23 14 36 14 36 0.97 2 22 0.00078 0.049 15.0 3.9 1 23 42 64 42 64 0.98 3 22 0.012 0.73 11.4 5.0 1 23 70 92 70 92 0.98 4 22 0.00027 0.017 16.5 6.4 1 23 98 120 98 120 0.98 5 22 0.036 2.3 9.8 7.2 1 23 126 148 126 148 0.97 6 22 6.4 4e+02 2.7 7.6 1 19 154 172 154 175 0.94 7 22 0.0031 0.19 13.2 0.8 1 23 188 210 188 210 0.98 8 22 0.0063 0.4 12.2 3.1 3 23 218 238 216 238 0.97 9 22 0.00012 0.0077 17.6 1.9 1 23 244 266 244 266 0.97 10 22 0.0086 0.54 11.8 3.6 1 23 272 294 272 294 0.98 11 22 0.00016 0.0099 17.2 2.1 1 23 300 322 300 322 0.98 12 22 0.00014 0.0085 17.4 1.4 1 23 328 350 328 350 0.98 13 22 5.9e-05 0.0037 18.6 1.2 1 23 379 401 379 401 0.98 14 22 7.6e-05 0.0048 18.2 2.7 1 23 407 429 407 429 0.98 15 22 0.038 2.4 9.7 5.2 1 23 435 457 435 457 0.97 16 22 0.0022 0.14 13.6 2.8 1 23 463 485 463 485 0.98 17 22 0.00076 0.048 15.1 3.5 1 23 491 513 491 513 0.97 18 22 0.0041 0.26 12.8 7.2 1 23 519 541 519 541 0.98 19 22 0.009 0.56 11.7 3.5 1 23 547 569 547 569 0.98 20 22 0.00041 0.026 15.9 1.4 1 23 575 597 575 597 0.96 21 22 0.00021 0.013 16.8 3.1 1 23 603 625 603 625 0.97 22 22 0.0039 0.25 12.8 2.8 1 23 631 653 631 653 0.98
Sequence Information
- Coding Sequence
- ATGAACCGGCACAAGTCGgtgcacaccgacgagaagccgttcagttgcgacctctgcgattacaagtgccgacTACGCACGCATCTGAAGCAGCACACGGCGAGACACAGCGGCGAGAGGCCGTTTAGTTGTAAACTTTGCGATTATGAGTGCCGACGCATCGGGCATTTACGAACGCACATGctaatacacaccgacgagaagccgtacaattgtgatctttgcgattacaagtgccgagAGCGCAGCCGGTTGAAGCGgcacaagttaacgcacaccgacgcgAAGCCGTTTGTATGCGATCATTGCGAGTATAAGTGCCGGCAGTCCGATAAATTGAGGCGGCACATGTtgaaacacaccgacgagaagccgttcagttgtgagctttgcgattataagtgtcgGCAGTTCGAGCATTTGAAAACGCACAAGTTGAGGCACGCCGACGAGAAGCCTTTCAGTTGTaatttttgcagttataagtgtCGACACTTGCAAAGCTTGAGGCAGCATGGgtGTCAACTGATTCCTAAAACTGAAACCGCAAGTGAAAAAACGTTCGAATGCGGAATATGCGACTCTAAATTTCAGCTTCGCTCGTATTTGCGCGAGCACACCTTAACACACACCCGCGACAAGTCCTTCGGCTGTTgcctctgcgattacaaatgccgaagACCCGGCGATTTAAAAAACCACCTGTTGATACACAtgggcgagaagccgttcgcttgTGACGTGTGCGGTTATCGCTGTCGGCGGCTCGAAAACTTGAAAGACCACAagctaacgcacaccgacgagaaaccgttcagctgcgagctctgcgattacaagtgcggACGGGCGAGGTATCTGAAGCAGCACAGGCTgaggcacaccgacgagaagccgttcacttGCGGCCTCTGCGGTTTTCGTTGCCGGAGATACGGCGACTTGAAAACTCACATGCTggtgcacaccggcgagaagccgttcagctgcgacGTTTGCGATTATGAATGCCGGCAGGTCGGGAACTTGAACACTCACATGCTGAAgcataccggcgagaagccgttcgcttgTGACCGCTGCGATTGCAGgtgTCAACCGTCCGCTAAAACCAaaagtgcaaataaaaaaacgtacGCTTGCTCGATATGCGACGCCAAGTTCCAATTTCGCTCGTACCTCCGCAAGCATATCtcaacacacaccgacgagaaaccctTCAGctgcgacctctgcgattataaatgccgaagaTCCGCGGATTTGAAAAACCACCTGTTAACGCAcacgggcgagaagccgttcgcttgTGACGcgtgcgattacaaatgccggcGGCTCAAGCACCTGAAAGACCACAagctaacgcacaccgacgagaaaccgttcagctgcgacctctgcgattacaagtgtcgCAGAGACGCGGATTTCAAAGTCCACATGTTGAAACAcacgggcgagaagccgttcagctgcgacgtctgcgattataaatgccggaaATACGGTAATTTGAAGAGTCACATGTTCATACACACGGGCGCGAAACCGTTCAGCTGCgacgtttgcgattataaatgtcgacaccTCGGACATTTGAAGGTGCACATGTTCAAACACgccgatgagaagccgttcagctgcgacgtctgcgattacaaatgcggATACCTCGGGCATTTCAAGAGTCACATGTTAATACAcacgggcgagaagccgttcgcttgcgacgtatgcgattacaagtgccggaAGCAATCGGATTTGAAAAGCCACGCGTTAATACACACGGGCGAAAAGCCGTTCGCCTGCGATGTTTGCGACTATAAATGCCGTAAGCAACGGGATTTGAGAAATCACATGCTGAGGCACAcaggcgagaagccgttcagctgtgacgtttgcgattataaatgccggctcGTCGGGAATTTGAAGAAACACAAAttgacgcacaccggcgagacaCCAGCGAAATTTCCACTtttgaaatag
- Protein Sequence
- MNRHKSVHTDEKPFSCDLCDYKCRLRTHLKQHTARHSGERPFSCKLCDYECRRIGHLRTHMLIHTDEKPYNCDLCDYKCRERSRLKRHKLTHTDAKPFVCDHCEYKCRQSDKLRRHMLKHTDEKPFSCELCDYKCRQFEHLKTHKLRHADEKPFSCNFCSYKCRHLQSLRQHGCQLIPKTETASEKTFECGICDSKFQLRSYLREHTLTHTRDKSFGCCLCDYKCRRPGDLKNHLLIHMGEKPFACDVCGYRCRRLENLKDHKLTHTDEKPFSCELCDYKCGRARYLKQHRLRHTDEKPFTCGLCGFRCRRYGDLKTHMLVHTGEKPFSCDVCDYECRQVGNLNTHMLKHTGEKPFACDRCDCRCQPSAKTKSANKKTYACSICDAKFQFRSYLRKHISTHTDEKPFSCDLCDYKCRRSADLKNHLLTHTGEKPFACDACDYKCRRLKHLKDHKLTHTDEKPFSCDLCDYKCRRDADFKVHMLKHTGEKPFSCDVCDYKCRKYGNLKSHMFIHTGAKPFSCDVCDYKCRHLGHLKVHMFKHADEKPFSCDVCDYKCGYLGHFKSHMLIHTGEKPFACDVCDYKCRKQSDLKSHALIHTGEKPFACDVCDYKCRKQRDLRNHMLRHTGEKPFSCDVCDYKCRLVGNLKKHKLTHTGETPAKFPLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -