Pinq024279.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:47550095-47557649[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.04 2.5 9.7 4.0 1 23 14 36 14 36 0.98
2 25 0.033 2 10.0 5.2 1 23 42 64 42 64 0.99
3 25 0.003 0.19 13.2 3.6 2 23 71 92 70 92 0.97
4 25 0.0071 0.44 12.0 7.1 1 23 98 120 98 120 0.98
5 25 0.002 0.13 13.7 2.6 1 23 126 148 126 148 0.98
6 25 0.00052 0.032 15.6 2.1 3 23 156 176 154 176 0.98
7 25 0.00033 0.021 16.2 0.7 1 23 182 204 182 204 0.98
8 25 0.00012 0.0072 17.7 0.8 1 23 210 232 210 232 0.98
9 25 5.7e-06 0.00036 21.8 1.6 1 23 238 260 238 260 0.97
10 25 0.0085 0.53 11.8 3.5 2 23 267 288 266 288 0.97
11 25 2.7e-06 0.00017 22.8 2.2 1 23 294 316 294 316 0.99
12 25 0.0011 0.067 14.6 1.5 1 23 322 344 322 344 0.97
13 25 5.4 3.4e+02 3.0 0.7 2 23 352 374 351 374 0.91
14 25 0.04 2.5 9.7 1.9 1 23 392 414 392 414 0.97
15 25 0.032 2 10.0 2.2 1 23 420 442 420 442 0.96
16 25 0.00027 0.017 16.5 4.1 1 23 448 470 448 470 0.98
17 25 0.00012 0.0077 17.6 1.4 1 23 486 508 486 508 0.98
18 25 0.036 2.3 9.8 1.9 1 23 514 536 514 536 0.97
19 25 0.57 36 6.0 3.9 1 23 542 564 542 564 0.95
20 25 0.17 10 7.7 0.1 2 23 571 594 570 594 0.91
21 25 1.6 1e+02 4.6 1.8 1 23 600 622 600 622 0.90
22 25 0.0023 0.14 13.6 1.1 3 23 628 648 626 648 0.96
23 25 6.9e-05 0.0043 18.4 2.2 1 23 654 676 654 676 0.98
24 25 0.0032 0.2 13.1 2.3 1 23 682 704 682 704 0.98
25 25 0.11 6.9 8.3 1.7 2 23 710 732 709 732 0.92

Sequence Information

Coding Sequence
ATGAAGCGGCACAGAACAACTCACGACGACAAGACGCCGTTCACCTGCGGTacttgcgattacaaatgccaaTACCCTAGCGAAATAAAGCGGCACAGAAAAAATCACGGCGACCAGAAGCGGTTCACCTGCGGTACTTGCGAATACAAATGCCAATACCTCAGCGAAATGAAGCGGCACAGAAGAACTCACGACGGCAAGAAGCTGCTCACCTGCGGtatttgcgattacaaatgccaaTACCCCAGCAAGATGAAGCGGCACAGAAGAACCCACAGGGACGAGAAGTCGTTCACCTGCGGTACTTGCAATTACAAATGCCGACACCTCAGCGAAATGAAGCGGCACAGGCGAATTCACCgggacgagaagccgttcacctgcgacgtttgcgattacaaatgccaaTTCCTCAGCTTGCTGAAGCGGCACCAGATAGTTCACtccaacgagaagccgttcggttgcgacctttgcgattacagaTGCCGACGGAGCGATTCACTAAAGGGCCACATgttaacgcacaccggcgagaaaccgtacgATTGTCAACTTTGCGATTCGAGTTTCCGCACGGGAACAGCCTTGAAGCAGCACGTGAGAACTCACACCCACGAAAAGCCGTACAATTGCCAAATGTGCGACCGCACGTTCAGTTTAATCGGTTCAATGCAGCAGCACATGAACACGCACACCGGTAACAGGCCGTTCAGCTGTGACTTGTGCGATCGAACGTTCCGATTTCGGGGGAATTTGACGCGGCACTTGCTGAATCACCCCAGCATGCAGCCGGTCAGCTGTAAGCTTTGCAAGTACACCTGCAACGGTCGGAGACAGTTGAATATTCACATGCAAAAGCACAGCGGAAAGAAGCCGTACAAATGCGAAGTTTGCGGCTGGCGGTTCAGAGTGTCTAACCATCTGCAATCGCACATGTtcacgcacaccggcgagaaaccgtacgCTTGTGAActgtgcgattacaagtgccggtCCGTCGGAAACTTGAATAAACACGTATCAAGGCACAATAATCAAGAGAAACTATTGAtctgcgatctttgcgattacaagtgccttCAGATTAAACAATGGAAGGAGCACATGCTTAACGCACActtATCTCGCCAAGATCCACTGCGCATATTACAGCGCGTCAAAGGAGAACTATTCAGGTGTGAcatttgcgattacaaatgcccgGACGTCACCAGAATGAAACGGCACacgttaatacacaccggcgagaagccgttcgcttgCGACTTCTGCGATTACAGGTGTCGTCAAAAAGGGCGCTTGAGCGATCACGTGTTATCACACACCGGCGTGAAACCGTACAGCTGCGACCGTTGCGATTACAGTTGCCGGCGGAGCAAGACCTTGAAAGAGCACATGGCGAAACACACCGGCGGCGCCGTGGGGTTAGAATCGTATAACGAACTGAGGCCGTTCAGCTGTGATTCGTGCGGGCGAAGGTGGCGATCGCCAGCGCACCTGAAGCGGCACATGCTAACGCAcacgggcgagaagccgttTAGCTGTGACGTGTGTGATTACAGATGTCAGGAACGCAGACAGTTGAATGTGCACGCGCTGAAGCACGCCGGGGAGAAGTCGTTCGCCTGTGATCTTTGCAACTTTAAATGTCACGAGCGCAACGACTTAAAAAACCACATGGTGCTACACACCGGTGAAAAGTCGGTCAGTTGCGAGATTTGCGACGACAAATACTTCCGATCTGAGGTTGGATTGAAGCGACATAACATGCTAGCACACACCGACGTTGAGCCTTTTAAGTGTGACGTCTGCGATTTTACGTGTGGAGATCCCTGCGGTGCGAGGGAGCACAAGCTAGCTCACGAAAAACCGATCGCTTGTGGCCTTTGTGATTATAGATGCGTCAAGCCGACAAGCTTGAAGCAGCACATGTTTACACACTCCAGGGAAAAACCGTTCAGCTGCAATCTCTGCGATTCCGCTTTCAGACAGTCGAGCCACTTGAAGTACCACTTgttgatacacaccggcgagaagccgttcacttGTGATTTTTGCGATTTCAAATGTCGAGCCGCCGGTGATTTGAAAAGGCACATGGTGAAGCACTCTGAGAAATCGCTctgttgcgatctttgcgattacagcTGTCAGCAAATTGATGATTTGAAGCAGCACGTGATTAACGCGCACGTAAAAGTGGAGAagcactaa
Protein Sequence
MKRHRTTHDDKTPFTCGTCDYKCQYPSEIKRHRKNHGDQKRFTCGTCEYKCQYLSEMKRHRRTHDGKKLLTCGICDYKCQYPSKMKRHRRTHRDEKSFTCGTCNYKCRHLSEMKRHRRIHRDEKPFTCDVCDYKCQFLSLLKRHQIVHSNEKPFGCDLCDYRCRRSDSLKGHMLTHTGEKPYDCQLCDSSFRTGTALKQHVRTHTHEKPYNCQMCDRTFSLIGSMQQHMNTHTGNRPFSCDLCDRTFRFRGNLTRHLLNHPSMQPVSCKLCKYTCNGRRQLNIHMQKHSGKKPYKCEVCGWRFRVSNHLQSHMFTHTGEKPYACELCDYKCRSVGNLNKHVSRHNNQEKLLICDLCDYKCLQIKQWKEHMLNAHLSRQDPLRILQRVKGELFRCDICDYKCPDVTRMKRHTLIHTGEKPFACDFCDYRCRQKGRLSDHVLSHTGVKPYSCDRCDYSCRRSKTLKEHMAKHTGGAVGLESYNELRPFSCDSCGRRWRSPAHLKRHMLTHTGEKPFSCDVCDYRCQERRQLNVHALKHAGEKSFACDLCNFKCHERNDLKNHMVLHTGEKSVSCEICDDKYFRSEVGLKRHNMLAHTDVEPFKCDVCDFTCGDPCGAREHKLAHEKPIACGLCDYRCVKPTSLKQHMFTHSREKPFSCNLCDSAFRQSSHLKYHLLIHTGEKPFTCDFCDFKCRAAGDLKRHMVKHSEKSLCCDLCDYSCQQIDDLKQHVINAHVKVEKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-