Pinq024547.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:50645876-50649982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.41 26 6.5 0.0 3 23 95 115 93 115 0.94 2 19 0.049 3 9.4 0.9 3 23 164 183 162 183 0.94 3 19 0.44 27 6.4 1.3 1 23 185 207 185 207 0.95 4 19 0.081 5.1 8.7 0.4 1 13 212 224 212 234 0.80 5 19 8.5e-05 0.0053 18.1 0.3 1 23 240 262 240 262 0.99 6 19 2.1 1.3e+02 4.2 1.2 2 23 269 290 268 290 0.79 7 19 7.8e-05 0.0049 18.2 2.0 1 23 296 319 296 319 0.97 8 19 0.036 2.2 9.8 0.4 1 20 330 349 330 350 0.96 9 19 4.3e-05 0.0027 19.0 0.0 2 23 362 383 361 383 0.97 10 19 2.2 1.4e+02 4.2 0.0 3 23 501 521 499 521 0.93 11 19 0.0068 0.43 12.1 0.9 1 23 541 564 541 564 0.93 12 19 0.014 0.9 11.1 1.3 1 23 569 592 569 592 0.94 13 19 0.0084 0.52 11.8 0.1 1 23 627 649 627 649 0.97 14 19 5.3e-05 0.0033 18.7 0.7 1 23 655 678 655 678 0.97 15 19 0.0001 0.0064 17.8 1.9 2 23 690 711 690 711 0.97 16 19 4.3e-05 0.0027 19.0 1.8 3 23 719 739 718 739 0.98 17 19 6.1e-05 0.0038 18.5 3.6 1 23 745 767 745 767 0.98 18 19 0.00042 0.026 15.9 0.5 1 23 773 795 773 795 0.98 19 19 0.0017 0.11 14.0 0.0 1 22 801 822 801 822 0.97
Sequence Information
- Coding Sequence
- ATGGGTGGACTTGTGGAGTGCGTGCGCTTCGGCGTCGTTGCAGGAACTCGGTCCTTCGGACCCCTGGTGGTTCTGGCGGAGGTCGAAAACAAAGCGGAACTCGATGATTGGGCCCGGATGCAAATAATACGCGTGGAATCAGACGGCACGCTCGTCTTGGTGAACAAAACCGAGGTGGAAGTTAAGAAACACCAGAAGCCCCCGATCGGTTACGTCAATCCTTTCAACTACGAAAATATGGCCGGTAAGAATAAGAGCCGGGCGGCGAATTTGAGGTGGGCTTGCGTGATCTGCAGTAAAGTCGCCGGCGATAAAGAAGACCTCATCGAACATTACGAGGGGCACAAACGCGAGAAGGATGAGATGATTAGGAAAGAGGAGGTAGCGGCGGACGATAGTGACTATGCCCCAATCGAGGTCGAATCGCCGCTGGGGAAGCACAGCAGGGGGCAACAAATACCTAACCTagatacgaaaaacaaaacaatttgctCGGAGTGCGGCAAAATGGTCCGGACGCGTTACTACGACCGCCACATGAAAAGCCACCGCTTCAAATGTACCTTGTGTTGCGACAGCTTCAGCACAAGCGAGCTACTGGCGGCCCACACGGACCTCCACCAGGACAACACGTACCCCTGCGACATCTGCGGGATTAGTTTCAAAGACCTCCTGACGTACGCCTTCCACAACCAGAAGCATTCCGGCCTGGGCATCTTCAAATGCCCCATCTGCCCCTTCGAGACGACGAACCGGATGTCGCTCAAGATACATATCAAGGTCCACAACAACGAATTCAAGTGCATTTGCGAGATCTGCGGGCGGGGGTTCATGTCGTTCGCCGCGCACGGCGACCACATGAAGCTCCACGAGGGCGAGAAGCGCTTCAAATGCGAGTACTGCGAGAAAACCTTCAATCTCCAACGCTACCTGAACGTTCACCTCAAGTTGAACCATAAGGACATCCTCTTGGGGCGCGACGAGTGGTTCGTGTGCTACGTTTGCGCCAGAAAATTCAAGTTCGAGACGAGCCTGGCGCGCCACCTCAGCTGCATTCACAACGTGGGGGAGAGCAGGAGGGTGACGTGCCCCGTTTGCGCTAAGGTCATAGCCAACAATTACAACCTGAAGGTGCACATGAGGGTGCACAACGGCGAACGGCCGTCCTTCGAACCCCTAGTGACGATAACGGAAGTGGAAAAGACGAAAGCCAAGTGGCACCGGAAGCTGCCGGAGATCGAAATAATCCCGGTGGACACGGACGGTAGCCTCATGATAAAAGACGAGGTCGCCCGTAGCGGCGGGAAGAAGCCGCCCCACGGCAAAACCCGCCAGCACCCGATCGAAATCACGACCACCACCAAGAGGATCCCCTTGAAATACAACAGCAAAAAGAAGCCGTCGCCCGGCTACGTCAACCCGTTCAACTACGAGAACCTGACCGTCAAGAATTTCCACCGCAAGAACAGGCACTTTGACAATTCGAATCTGAAGTGGGCGTGCATGATCTGCAGCGAGGTGGCCGTCGATAAGGAGGGGCTCATCGAGCATTACGAGGGGCACAAGCGCGAGAGGGACGAGCGGATTAAATCCGAGCCGGCGGACGACGACAGTGAGTATTTCAACTGCGCCATCTGCGGGCAGGAGTTCACGTCGCTCAAGGGGTACGAGAAGCATTTCGATAAGAAGCACGGCGAACGGAAGTACAGCTGCCTCGAATGCAGCAAGGTTTACAAGGACGCCCTCCAGCTGTGCATACACAACTACACCATCCACGCGTCGCCGGACAAGAAATACAAGTGCATTAGTTGCGAGTACACGACGTTCGTGAGGAAGAAACTCAAGGAGCACTTGGATGAGCACGAGGCGTCCTTTCAGTTTAAGTGCGAGCTTTGTAATAAGGGGTTTGAGTTGGAGGGTGACTTCGAGGAGCACAAGATCGTTCACGGGGTGACCTCGCCGTTCTCCTGCGACGTCTGCGGCAAGACCTTCCCGTACACCAAGTACCTCTTGGTGCATAAAAAGACTGCGCACCCGGAGATATTCGGGAGCAACCCCGCGGCGAACGAGTGCCAGCTGTGCAACAAGCGCTTCGCGCACAAGAAAAGCCTCATCTTGCACATACGCGGCCACACGGGGGAGAATTCGGTTTTGTGCGACATGTGCGGCAAGCGACTGTCGAGTAGCGAGCACCTCAAGCAACACCTGAGGATTCACACGGGTTTCAAACCCCACAAGTGCTCGGTGTGCGGCAAGGGCTTCGCGAAAAAGTGCAACCTGACTTTACACGAGCGGGTTCACAGCGGGGAAAAACCGTACGTGTGCCGCGTGTGTTCCAAGGCGTTCTCGCAGAGATCGACCGTAGTCATCCACGAGAGGTATCACACCGGGGAAAGACCCTACGTGTGCACCTTGTGCAATAAAGGTTTCGTGGCGAAAGGACTGCTCAGTGTTCACATAAAAACTTGCACCGTCATACCCGCCGAGTATTTATAA
- Protein Sequence
- MGGLVECVRFGVVAGTRSFGPLVVLAEVENKAELDDWARMQIIRVESDGTLVLVNKTEVEVKKHQKPPIGYVNPFNYENMAGKNKSRAANLRWACVICSKVAGDKEDLIEHYEGHKREKDEMIRKEEVAADDSDYAPIEVESPLGKHSRGQQIPNLDTKNKTICSECGKMVRTRYYDRHMKSHRFKCTLCCDSFSTSELLAAHTDLHQDNTYPCDICGISFKDLLTYAFHNQKHSGLGIFKCPICPFETTNRMSLKIHIKVHNNEFKCICEICGRGFMSFAAHGDHMKLHEGEKRFKCEYCEKTFNLQRYLNVHLKLNHKDILLGRDEWFVCYVCARKFKFETSLARHLSCIHNVGESRRVTCPVCAKVIANNYNLKVHMRVHNGERPSFEPLVTITEVEKTKAKWHRKLPEIEIIPVDTDGSLMIKDEVARSGGKKPPHGKTRQHPIEITTTTKRIPLKYNSKKKPSPGYVNPFNYENLTVKNFHRKNRHFDNSNLKWACMICSEVAVDKEGLIEHYEGHKRERDERIKSEPADDDSEYFNCAICGQEFTSLKGYEKHFDKKHGERKYSCLECSKVYKDALQLCIHNYTIHASPDKKYKCISCEYTTFVRKKLKEHLDEHEASFQFKCELCNKGFELEGDFEEHKIVHGVTSPFSCDVCGKTFPYTKYLLVHKKTAHPEIFGSNPAANECQLCNKRFAHKKSLILHIRGHTGENSVLCDMCGKRLSSSEHLKQHLRIHTGFKPHKCSVCGKGFAKKCNLTLHERVHSGEKPYVCRVCSKAFSQRSTVVIHERYHTGERPYVCTLCNKGFVAKGLLSVHIKTCTVIPAEYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -