Pinq024423.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49480711-49494179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.072 4.5 8.9 1.9 3 23 11 31 9 31 0.98 2 37 0.011 0.69 11.4 0.8 1 23 37 59 37 59 0.95 3 37 0.023 1.4 10.4 1.2 3 23 67 87 65 87 0.98 4 37 0.053 3.3 9.3 6.4 1 23 93 115 93 115 0.98 5 37 0.0027 0.17 13.3 0.8 2 23 132 153 131 153 0.95 6 37 0.0025 0.16 13.5 3.1 1 23 159 181 159 181 0.98 7 37 0.0071 0.44 12.0 2.5 1 23 187 209 187 209 0.96 8 37 0.0035 0.22 13.0 3.2 1 23 215 238 215 238 0.98 9 37 0.0047 0.29 12.6 1.0 2 23 245 267 244 267 0.94 10 37 0.94 59 5.4 2.0 1 23 301 323 301 323 0.96 11 37 0.019 1.2 10.7 5.2 1 23 329 351 329 351 0.97 12 37 1.3 83 4.9 0.0 1 19 362 380 362 381 0.93 13 37 0.00034 0.021 16.2 1.1 1 23 396 418 396 418 0.97 14 37 0.021 1.3 10.5 6.1 1 23 424 446 424 446 0.98 15 37 0.0077 0.48 11.9 2.7 3 23 454 474 452 474 0.97 16 37 0.29 18 7.0 4.2 2 23 481 502 480 502 0.96 17 37 0.0055 0.34 12.4 1.5 3 23 510 530 508 530 0.96 18 37 0.0003 0.019 16.4 1.7 1 23 536 558 536 558 0.98 19 37 1.2 73 5.1 4.4 1 21 564 584 564 585 0.93 20 37 0.0013 0.082 14.3 2.8 1 23 591 613 591 613 0.98 21 37 0.043 2.7 9.6 5.8 1 23 619 641 619 641 0.97 22 37 0.0065 0.41 12.1 2.9 3 23 649 669 647 669 0.97 23 37 0.0077 0.48 11.9 5.2 1 23 675 697 675 697 0.98 24 37 0.037 2.3 9.8 4.9 1 23 703 725 703 725 0.97 25 37 0.072 4.5 8.9 1.8 3 23 733 753 731 753 0.97 26 37 0.16 9.9 7.8 2.9 3 23 761 781 759 781 0.97 27 37 0.014 0.85 11.1 0.2 3 23 789 809 787 809 0.98 28 37 0.00057 0.036 15.5 2.3 1 23 815 837 815 837 0.97 29 37 0.17 11 7.7 1.5 3 23 845 865 843 865 0.97 30 37 0.004 0.25 12.8 3.9 1 23 888 910 888 910 0.97 31 37 0.081 5 8.7 1.2 1 19 916 934 916 938 0.93 32 37 0.014 0.87 11.1 3.7 1 23 944 966 944 966 0.96 33 37 0.0015 0.093 14.2 3.4 1 23 972 994 972 994 0.97 34 37 0.045 2.8 9.5 5.5 1 23 1000 1022 1000 1022 0.98 35 37 0.0026 0.16 13.4 3.4 3 23 1030 1050 1028 1050 0.98 36 37 0.12 7.5 8.2 5.6 3 23 1058 1078 1056 1078 0.97 37 37 0.21 13 7.4 3.6 1 23 1084 1106 1084 1106 0.98
Sequence Information
- Coding Sequence
- ATGATACACaacgacgagaagccgttcggttgcgaCATCTGCGATTACAAAAGCCATTTCCTGGGAAACTTGAACCGGCACAAGCTGACGCACGTCGTCGAGATGCCGTTCGCTTGTGacgtctgcgattataaatgcagaCGCGTCGCGCAGTTACAGGAGCACAAATTGGCgcacaccggcgaaaaaccGTTCGGCTGTGAcgtctgcgattataagtgcaaACGCGTCGGAGCTTTAAGAGATCACAAGCTGACGCACAGCGTCGAGAACctgttcagttgtgatctttgcgattacgaATGTCGACAGCACAGGAGTTTCAAGCTGCACATGCTgaagcacaccggcgagaacCCCCCCAAAACCGAAGCACCGAATAAAAAATCAGTCGAATGCCGGATATGCAATTCGAGATTTAAATCGCGCAAAAATCTCCGCGACCACGCTtcaatacacaccggcgagaagccgttcacttGCGATCTGTGCGATTTCAGATGCCGTCGCCCCGCCAGCCTGAAACTCCACAAGTCAACACActccggcgagaagccgttcgcctGCGACCTCTGCGATTTCAGATGCCAACGCGCCGGAAACCTGAAACGCCACAAGATGCAGCACACCGGCGAGATGCCGTACAGTTGCGACGTTTGCGATCACAAAAGCCGGCTGCTCGGCAACTTGAAGAAGCACTACCGGACGAAGcacgccgacgagaagccgCTGAGGTGCGGCGCTTGCGATTACGCGTGCCGGCAAAAATCGCAGCTGAACCAGCACGTGTTGGTGAAACACACCGCCGAGAAGCTGTTCAGTTGCGACGCTTGCGGTTTCGTGTGTCGAAGCGCCGAGGCGTTGAGGTGCCACAAGTTTAAACACACCGGCGAGATGCCGTTCGCCTGTGACGCctgcgattttaaatgtcgaGTCTTCGGGTCGTTGAAGCAGCACAAGCTGatgcacaccgacgagaaaccgttcagttgtgatctctgcgattataaatgccggcagGCCGTACACCTGAGGATGCACAAGTTGAAGCACGCGAAGAAGCGATATTGTTACGACGAACCGTTCCGTTGTGGAGTTTGCGATGCCAAATTCCTGAGCGCTACGTCCTTGGAAGAGCACGtACCTCAACGAACACCTAAAATCGAAGCAACGGCTAAAAAAACATTCGAATGCCAGACATGCGACTCTAGATTTAAATCTCGCGCGAATCTGCGCGAGCACACTTCGATACACACGGGCGAGAAGCCCTTCGAATGCGccctctgcgattacaaatgccgaaaGCGCGTCAAGCTGAAACACCACATGCTAAAGCActccgacgagaaaccgttcggctgCGACGTCTGCGATTTCAAATGCCGACGGCTCGGAAACTTGAAACAGCACCGGATCAGACACGCCGACGAAATGCCCCTCAAATGCAACtcctgcgattataaatgccgacgcgTGCAGCAACTGAAAGAGCACAGCTTAAAACACACCGGCGAAATGGCGTTCGGTTGTGACGCTTGCGATTATCGATGTCGGCGCGCCCCGCAGTTGAAGCAGCACATGTTGAAGcacgccgacgagaagccgttcgtcTGTGATGTTTGCGGTTATAAGTGTCGGCGTGCGCAGAATTTGGAGGATCACAAGCtgaagcacaccgacgagaggccgttcagttgtgacgcctgcgattataagtgtcgaCGCATCCAGAACCTGAAGGTTCACAAGTGTCGAGGCATCTCTTCGCCGTTCGAATGTCGGACGTGCAATTCGAAATTCAAATCCCGCGCGAACCTGCACAATCACATtctaatacacaccggcgagaagcctttCGCCTGCGATATTTGCGACTATAACTGCCGACACGTCGGAAGCTTGAAACACCACAGGTtgaaacacaccgacgagaagccgttcgggtGCGACCTCTGCGActataaatgccgacagctcGGAAACCTGAAGCAGCACCGGTtgaaacacaccgacgagaagccgttcgtcTGTCGCCACTGCGAATTTAAATGTCGGAAGCAGGGCGATTTGAAAACTCACATGCTGGTGCACACGGGGGAGAAGCCGTTCGCTTGCGACGTTTGCGATTATCGATGTCGACAGCTCGTGCACTTGAAGTATCACAAGCtaaagcacaccgacgagaaaccgtttggTTGTGAtatctgcgattataaatgccagAAGAAGTGGGATTTAAAAATGCACGTGTTGAAGCATGCCGGCGAGAAGACGTTCGGCTGCGATgtctgcgattataagtgtcgaCGCGCGCAGCGATTGAAGGAGCACAAGCTGAAGCACACCGaagagaagccgttcggttgcgaCGTGTGCGATTATAAGGGCCGACGGTTCGGTGATTTGAAGCTTCACATGCTGgtgcacaccgacgagaagccgttcgcttgCGACGTTTGCGGTTATAAGTGTCGGCGCGCGCAGAATTTGAAGGAGCACAAGTTGAAGCACAGCGACGAGAGACCTTTCGGctgtgatctgtgcgattataagtgccagCGGCTCGGGGATTTGAAAATTCACAAGGCTAAACACACCGACGATAAGCCGTTCCGCTGTCAACGGATCTCCAAAACAAAAACCGCCCTGAACAAAAAAACCTTCGAATGCCGAATCTGCACTTGCAAATTTACATCTCGCACGTACCTGCGCACGCACGTTCTgatacataccggcgagaagccgttcagctgtggactttgcgattacaaatgccggaTGCCCGGAAACCTGAAGGAGCACGAGCCGAAACACTTCGACGCGAAGCCGTTCGCCTGTGACCTGTGCGATTTCAAGTGCCGACAGCTGGGACACTTGAAACAGCACacgttaatacacaccggcgagaagccgttcgcttgtggcctttgcgattttaaatgccgaaCGCACGGCAACCTAAAAAATCACATGCTGATACACACCGATCAAAAACAGTTCCGTTGTGACGCTTGCGATTATCAATGTCGACGTTTCGATCACCTGAAAGAGCACTTGCTGAAACACACCGACGacaagccgttcggttgtgagctttgcgattataagtgccggcGGTTCGGAAATTTGAAGCAGCACATGTCGAGGCACGCCGACGAAAAGACGTTCGGTTGtaacctttgcgattataagtgccggcATCCTAGACTTTTGAAGCAGCACAAGTTGAAACACAacgatgagaagccgttcagttgtgatcgtTGCGATTTCAAGTGTCGATGGGCTATGTCTTTGAAGAGGCACATGTTGAAACATGAAGAGGCTTCGTTTGTCAACGGAGGAAGCTAA
- Protein Sequence
- MIHNDEKPFGCDICDYKSHFLGNLNRHKLTHVVEMPFACDVCDYKCRRVAQLQEHKLAHTGEKPFGCDVCDYKCKRVGALRDHKLTHSVENLFSCDLCDYECRQHRSFKLHMLKHTGENPPKTEAPNKKSVECRICNSRFKSRKNLRDHASIHTGEKPFTCDLCDFRCRRPASLKLHKSTHSGEKPFACDLCDFRCQRAGNLKRHKMQHTGEMPYSCDVCDHKSRLLGNLKKHYRTKHADEKPLRCGACDYACRQKSQLNQHVLVKHTAEKLFSCDACGFVCRSAEALRCHKFKHTGEMPFACDACDFKCRVFGSLKQHKLMHTDEKPFSCDLCDYKCRQAVHLRMHKLKHAKKRYCYDEPFRCGVCDAKFLSATSLEEHVPQRTPKIEATAKKTFECQTCDSRFKSRANLREHTSIHTGEKPFECALCDYKCRKRVKLKHHMLKHSDEKPFGCDVCDFKCRRLGNLKQHRIRHADEMPLKCNSCDYKCRRVQQLKEHSLKHTGEMAFGCDACDYRCRRAPQLKQHMLKHADEKPFVCDVCGYKCRRAQNLEDHKLKHTDERPFSCDACDYKCRRIQNLKVHKCRGISSPFECRTCNSKFKSRANLHNHILIHTGEKPFACDICDYNCRHVGSLKHHRLKHTDEKPFGCDLCDYKCRQLGNLKQHRLKHTDEKPFVCRHCEFKCRKQGDLKTHMLVHTGEKPFACDVCDYRCRQLVHLKYHKLKHTDEKPFGCDICDYKCQKKWDLKMHVLKHAGEKTFGCDVCDYKCRRAQRLKEHKLKHTEEKPFGCDVCDYKGRRFGDLKLHMLVHTDEKPFACDVCGYKCRRAQNLKEHKLKHSDERPFGCDLCDYKCQRLGDLKIHKAKHTDDKPFRCQRISKTKTALNKKTFECRICTCKFTSRTYLRTHVLIHTGEKPFSCGLCDYKCRMPGNLKEHEPKHFDAKPFACDLCDFKCRQLGHLKQHTLIHTGEKPFACGLCDFKCRTHGNLKNHMLIHTDQKQFRCDACDYQCRRFDHLKEHLLKHTDDKPFGCELCDYKCRRFGNLKQHMSRHADEKTFGCNLCDYKCRHPRLLKQHKLKHNDEKPFSCDRCDFKCRWAMSLKRHMLKHEEASFVNGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -