Pinq024368.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:48832820-48839774[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0003 0.019 16.4 3.6 1 23 36 58 36 58 0.98
2 24 0.0068 0.43 12.1 1.7 3 23 66 86 64 86 0.96
3 24 0.049 3.1 9.4 3.1 2 23 93 114 92 114 0.95
4 24 0.18 11 7.6 0.3 2 23 121 142 120 142 0.95
5 24 0.04 2.5 9.7 6.2 3 23 182 202 180 202 0.97
6 24 0.00048 0.03 15.7 1.2 1 23 208 230 208 230 0.98
7 24 0.00028 0.018 16.4 1.7 1 21 236 256 236 257 0.94
8 24 0.18 11 7.7 2.3 1 23 283 305 283 305 0.98
9 24 0.11 6.6 8.3 0.2 1 23 311 334 311 334 0.94
10 24 3.7e-05 0.0023 19.2 1.8 2 23 351 372 350 372 0.98
11 24 0.0011 0.072 14.5 3.1 1 23 378 400 378 400 0.98
12 24 0.46 29 6.3 3.1 1 23 406 428 406 428 0.97
13 24 0.0048 0.3 12.6 1.8 1 23 434 456 434 456 0.98
14 24 1.4e-05 0.00089 20.5 0.6 1 23 462 484 462 484 0.97
15 24 1.1e-05 0.00066 20.9 2.3 1 23 503 525 503 525 0.98
16 24 0.0056 0.35 12.4 1.7 1 23 531 553 531 553 0.98
17 24 0.00082 0.051 15.0 2.4 1 23 560 582 560 582 0.99
18 24 0.0022 0.14 13.6 1.7 1 23 588 610 588 610 0.98
19 24 0.0017 0.11 14.0 5.6 1 23 616 638 616 638 0.99
20 24 0.00012 0.0073 17.6 1.5 1 20 669 688 669 692 0.94
21 24 0.1 6.5 8.4 1.4 1 23 698 721 698 721 0.95
22 24 0.00028 0.017 16.5 0.3 1 23 731 753 731 753 0.95
23 24 0.01 0.62 11.6 0.2 1 23 759 781 759 781 0.98
24 24 0.0021 0.13 13.7 1.8 1 23 787 809 787 809 0.98

Sequence Information

Coding Sequence
ATGGGAATTTCCTtgtcagttggcaacactgcatcaAGTCCAGACTTGTCAACAGCACGTAAAATCGTCCGCGTCAAACAGGGACGGCCAACAGTATCTCCCAAGTTCAAATGTGACCGTTGCAGCTACGCCTGCGCGAACTCGACGAACTTAAAAAGGCACATCTACacacacaccggcgaaaaaccGTTCGGATGCGATCTGTGCGACTACAAGTGCGCGCGCGCGTACCTATTGAAGAAGCACAGGTACATTCACGCCAGCGTGAAACCCCTGAAGTGCCATCTATGCGATTACAGGTGCATCACGAAGAACAGTTTAGACACGCACGTGCTCGCCCACCCCGAATTCAGGCCGTGCCGGTGTGATTTCTGCGGCGATGAATTCGCGAACGCCGAGTTCCTGGCCGCGCACGCGACGAAACACACCGGCGAGTTACCCTTAAGGTGCGGCCTTTGCCAACATCAAATTGACGGCGGCGGTCTTTCATCAAAGCCGCCGAACGCTTTCGAGAGAAAAAGTTCGGCGGAAAAAAAGTTTGGCTGTCACATTTGCTGTCGCCTTTTCAGTCATTCCGTTAATTTAAAGAGGCACATGGCgatgcacaccggcgagaaacgcTTCAGGTGCAACGTATGCAACTACGAGTCTTATCGATCTGAATATTTGAAAAGACACGTGGCGACGCATACCGACGAGAAGCCTTACAAGTGTAATAAGTGCGATTACAGCTGCAGCAGGCAGAAGTCTTTAATCATACACGCTAAAGAGTGTGCTCGTTTAAATCGAGAGGCAAGTGGTACTGATGGTGTCATTTTGCGACGAAAACCTCGCGCGCTTCGCACTTACAAATGCGAGCTCTGCGATTACACGAGCACCGCTCGGCAGCGTTTCATAAAACACACGTacacacacaccgacgagaaaccgtttcgCTGCGATATTTGCGCCTATCAGTGCGTCGAAGCCAAGCAACTCGAGGCTCACGTGCTATTAGAACACGGAGGCGAAAAGACCGTTCGAGAGAAACGCCCCCGTTACCGGCCGGTCCAGTGCGACCGCTGCGGTCGCAGACTCACCAGCTCCAACCACTTAAAAGCGCACATGCTCACCCACACGGGCGAGAAGCCTTACAAATGCGACCAGTGCGATTACAGATGCAGCCAGTCGGGGACGTTGTACTCGCATCGACTGATACACAagggcgagaagccgttcaagtGCGACCTGTGCGAGTACAGGTGCTTCTCGAGAGGTATCCTGAAGAAGCACCTGGTGACGCATTCCGACGTCAGACCGCACGAGTGCAGTATGTGCGAATATAAGGGGAGGAAGGCGAGGGATCTGCAGAGGCACGTGCGTTCGCATACCGGCGAGAGACCGTACGCTTGTGATACCTGCTCGCGGAAATTTAAGAGCCCCGAGGATCTGAAGAGGCACGCGCtcacgcacaccggcgagaaaccgttcaaTTTCCACGTCAAGCAGGACGTTCCCGAAAGGCGCTACCAATGCGGAGATTGCAGCCACACCTTCTCCAAGCTAGGCAACTTAAAAAGACACGTCAGGCTGCACGTCAGCGGAAAAACATTCGAGTGCGACGAATGCGATTACAAGTGCGTCTACGCCAAACAAATGAAAGAGCACGTGAGTACTCACTCGCCGACCTTCAAGCCCTTCAAGTGTAAGCTATGCGACAATAGCTACGCTTACATGGAGAGCTTTCGCAAACACATGAGCACTCACAGCGGCTTGTTGCCGTACTCGTGCGATCGGTGCCATGAAAAATTCGGCAAGGCTGCGGATTTCAAGTCGCACATGTTgttgcacaccggcgagaaaccgtacgAGTGCGATTACTGCTCTTACAAGTGCACGACGCTGGGAACTTTCAACAGACATCGTCGGCGACACACCGGCGAGAGGCAGTCGAAGTGCGAGATGTGCGGACCGGCATCGTTTTGCTTGGGCCAACACGCTTTGAAGCACGACGCCGAGAAACCGTTCGAATGCGACAAGTGCGACTTACGCTTCGCCCACAACTCCCAGCTGAAGAAGCACGTGTGGATGAGGCATTCCGGCGAGCAATTGTTTCAGTGTAAGCTTTGCAATTACCAAAGCAACAAAGCCGTCACCTTGCACTGGCACATCGTGAAGCTGCACcagaaaagaaggaaaatcgAGAGGCGGTTCAAGTGTGACGTGTGCGATCGCACGTTTGCCGCCGCGGCGTACTTGAAAAGGCACAGCTTCATCCACACCGCCGAGAGGAGTTTTAGGTGTAAGCTGTGCGATTACGCGACTTTCCAGATCGGACGCCTGAACGCGCATATGTTggtacacaccgacgagaagccttATAAATGCGATCAGTGTGACTACAGGGCTAAACAAGAGCAATACTTGCGGGTTCACATGTTTAAGCATACTGAGGATTATTTGCAAATGAATTGA
Protein Sequence
MGISLSVGNTASSPDLSTARKIVRVKQGRPTVSPKFKCDRCSYACANSTNLKRHIYTHTGEKPFGCDLCDYKCARAYLLKKHRYIHASVKPLKCHLCDYRCITKNSLDTHVLAHPEFRPCRCDFCGDEFANAEFLAAHATKHTGELPLRCGLCQHQIDGGGLSSKPPNAFERKSSAEKKFGCHICCRLFSHSVNLKRHMAMHTGEKRFRCNVCNYESYRSEYLKRHVATHTDEKPYKCNKCDYSCSRQKSLIIHAKECARLNREASGTDGVILRRKPRALRTYKCELCDYTSTARQRFIKHTYTHTDEKPFRCDICAYQCVEAKQLEAHVLLEHGGEKTVREKRPRYRPVQCDRCGRRLTSSNHLKAHMLTHTGEKPYKCDQCDYRCSQSGTLYSHRLIHKGEKPFKCDLCEYRCFSRGILKKHLVTHSDVRPHECSMCEYKGRKARDLQRHVRSHTGERPYACDTCSRKFKSPEDLKRHALTHTGEKPFNFHVKQDVPERRYQCGDCSHTFSKLGNLKRHVRLHVSGKTFECDECDYKCVYAKQMKEHVSTHSPTFKPFKCKLCDNSYAYMESFRKHMSTHSGLLPYSCDRCHEKFGKAADFKSHMLLHTGEKPYECDYCSYKCTTLGTFNRHRRRHTGERQSKCEMCGPASFCLGQHALKHDAEKPFECDKCDLRFAHNSQLKKHVWMRHSGEQLFQCKLCNYQSNKAVTLHWHIVKLHQKRRKIERRFKCDVCDRTFAAAAYLKRHSFIHTAERSFRCKLCDYATFQIGRLNAHMLVHTDEKPYKCDQCDYRAKQEQYLRVHMFKHTEDYLQMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-