Pinq024240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:47151323-47160750[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0054 0.34 12.4 4.7 1 23 49 71 49 71 0.98
2 20 0.00046 0.029 15.8 1.4 1 23 77 99 77 99 0.97
3 20 0.00091 0.057 14.8 2.6 1 23 105 127 105 127 0.98
4 20 0.00095 0.06 14.8 1.0 1 23 133 155 133 155 0.97
5 20 2.2e-05 0.0014 19.9 2.5 1 23 161 183 161 183 0.97
6 20 0.00018 0.011 17.1 2.1 2 23 190 211 189 211 0.97
7 20 0.037 2.3 9.8 0.1 1 23 217 239 217 239 0.98
8 20 6.2e-05 0.0039 18.5 0.8 1 23 245 267 245 267 0.99
9 20 9.6e-05 0.006 17.9 2.9 1 23 273 295 273 295 0.99
10 20 0.089 5.6 8.6 3.5 2 23 301 323 300 323 0.93
11 20 0.0034 0.21 13.0 6.4 1 23 394 416 394 416 0.98
12 20 1.2 76 5.0 3.1 1 23 422 444 422 444 0.96
13 20 0.0066 0.41 12.1 2.6 2 23 451 472 450 472 0.97
14 20 5.2e-06 0.00033 21.9 1.1 1 23 478 500 478 500 0.96
15 20 0.031 2 10.0 2.1 1 23 506 528 506 528 0.97
16 20 0.0018 0.11 13.9 4.6 1 23 534 556 534 556 0.98
17 20 7.3e-06 0.00046 21.4 2.4 1 23 562 584 562 584 0.99
18 20 0.00041 0.026 15.9 0.9 1 23 590 612 590 612 0.99
19 20 8e-05 0.005 18.2 2.0 1 23 618 640 618 640 0.99
20 20 0.0011 0.067 14.6 2.5 2 23 645 666 644 666 0.96

Sequence Information

Coding Sequence
ATGAACCGCTTAGCGAACCGCGCGGCGGATGCTTCCATGGACGTTTTAGGatgttttaaatcAGTAAGGACATCCGCCGAGCGTGGCGGTTTCGATCAGTTCATACCCAAATACAACACGCTGTCATCCGAAGGCGTCAAACTGTTCACttgcgacctctgcgattacaaatgccgacgaATCGGTCACATAAAGCAGCACATGAAGATCCACTCGAGCGAGAAGCCCTTCACCTGCGAgatttgcgattacaaatgccgattCGCCGGCAGCCTGCGAAAGCACGCgttaatacacaccgacgagaagccgttcgtgTGCGACCGTTGCGGTTACAAGTGCCGCGCGACCGACGGCCTCAAGCAGCACATGCGAAAGCACAcgggcgagaaaccgttcgcttGCGACGTGTGCGGTCAGAGGTGCCAGAATTCCGGAAACTTGGGCAGGCACAAGCTGACGCACACCCGCGACAAACCGTTCGCTTGCGAATTCTGCGATTACAGCTGTCGCCGTCCGGAATACCTGAACCGACACATGCTgaggcacaccggcgagaaaccgctGCAATGTGACCTGTGCGATTATAGATGCGCGCTGCCCGCGCATTTAAAACGGCACATgctgacgcacaccggcgaaaGACACTTCAAATGCAATCTCTGCGCTTACGAAGCCAGCGTGGCCGGAAACTTGAGGCTGCACTTATtaaagcacaccgacgagaagccgtttaaGTGCGGGCGTTGCGACTACGTCAGCAAATCGGCCAGATATTTAAAGATACACATGCGAGTACACTCGGATGAGAAACCATTTAAGTGCAAGCTCTGCAAATACGCGTCCAAATTTCAAGgtaatctacagaaacataTGACAACGCACGACGAGAAGCTGCTCAAGTGTAAAGCGTGTGAATACACTTGTAAATCGACCAAAGACTTAAAAAGGCACGCGTCGTCTTCACACGTGACTAAACCAAGACAAGTTTCTTTAAAAGCTCTTCAAGGTTACTACAATTCTGATAAGCTTCGGCGGAAACTTAAGGCTGCACATGGCGACGATACACGCCGATGCTCCGACGTTTCTAAACCTACGTTTTCGAACTGGACGTCCTGGGAACCCGATAATTCCGAAGATCTCGTATACGTCACAGTGTGGCATAACGGTGAGAAGCTGTTCGTCTGCGACCTCTGTGATCACAAATGCAAGCGAAAGTACGCAATGAAACAGCACCTGAAGACACACTCCGAGGAGAAGCCTTTTTTCTGTACGCTCTGCGAGCACAGAAACCGATCGGCCAAGGGTTTGAAGAAGCACTTGATAAGACACAGCGACGATAAGCAGGTCGTCTGCGATCGGTGCGGCTACGAATGCCACACGGTCGGGATGTTGAAGCAGCACATGCGaaggcacaccggcgagaagccgttcgcttgCGACCTGTGCCCCCAGAGATTTCGCCAGTCTTCGAACCTGAGGAGGCACAAGGTGACGCACACCACCGAGAAGCACTTCAGCTGCGAGTTCTGCGGCTACAAGTGCTTAACCGAGGAGTACCTGAAGCGTCACTTGATAATACACaacggcgagaaaccgttcaagtGCACCTTCTGTGATTTTAAGTGCTCGCAGGCCGCGTATCTGAAGCGGCACGTCTCgaggcacaccggcgagaagccgtacaAATGCGACGTTTGCGGTCACGAATGCAACCGTCCCGAAAACTTAAAGCTGCACATgctgacgcacaccgacgagaggCCGTTCAAGTGCGGACGCTGTGAGTACGCGAGCAAGACGGCGAGGTATTTGAAACTGCACATGCGGGTGCATTcggacgagaagccgttcaagtGCGACCTTTGCAAGTACGCGTCCAAGTTTCAAGGTAACTTGCAGAAACATATGACGACGCACGAGGATCTTCTGCGATGTAATGTTTGCGAATACACGTGTAAATCGGCTAGGGATTTGAAAAAGCACGTGTCATCACACGCCAGTGAGAATTCTTAA
Protein Sequence
MNRLANRAADASMDVLGCFKSVRTSAERGGFDQFIPKYNTLSSEGVKLFTCDLCDYKCRRIGHIKQHMKIHSSEKPFTCEICDYKCRFAGSLRKHALIHTDEKPFVCDRCGYKCRATDGLKQHMRKHTGEKPFACDVCGQRCQNSGNLGRHKLTHTRDKPFACEFCDYSCRRPEYLNRHMLRHTGEKPLQCDLCDYRCALPAHLKRHMLTHTGERHFKCNLCAYEASVAGNLRLHLLKHTDEKPFKCGRCDYVSKSARYLKIHMRVHSDEKPFKCKLCKYASKFQGNLQKHMTTHDEKLLKCKACEYTCKSTKDLKRHASSSHVTKPRQVSLKALQGYYNSDKLRRKLKAAHGDDTRRCSDVSKPTFSNWTSWEPDNSEDLVYVTVWHNGEKLFVCDLCDHKCKRKYAMKQHLKTHSEEKPFFCTLCEHRNRSAKGLKKHLIRHSDDKQVVCDRCGYECHTVGMLKQHMRRHTGEKPFACDLCPQRFRQSSNLRRHKVTHTTEKHFSCEFCGYKCLTEEYLKRHLIIHNGEKPFKCTFCDFKCSQAAYLKRHVSRHTGEKPYKCDVCGHECNRPENLKLHMLTHTDERPFKCGRCEYASKTARYLKLHMRVHSDEKPFKCDLCKYASKFQGNLQKHMTTHEDLLRCNVCEYTCKSARDLKKHVSSHASENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-