Pinq024431.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- ZFX
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49544568-49550052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.002 0.13 13.8 3.6 1 23 41 63 41 63 0.98 2 20 2.8e-07 1.7e-05 25.9 1.3 1 23 67 89 67 89 0.98 3 20 0.0076 0.48 11.9 0.5 1 23 95 117 95 117 0.98 4 20 0.011 0.67 11.5 2.4 1 23 123 145 123 145 0.97 5 20 0.02 1.2 10.7 1.0 3 23 153 173 151 173 0.97 6 20 6.1e-06 0.00038 21.7 0.5 2 23 180 201 179 201 0.96 7 20 0.0036 0.23 12.9 1.6 1 23 207 230 207 230 0.95 8 20 0.0029 0.18 13.2 3.7 1 23 280 302 280 302 0.98 9 20 5e-08 3.2e-06 28.2 0.7 1 23 306 328 306 328 0.99 10 20 0.0063 0.4 12.2 0.9 1 23 334 356 334 356 0.98 11 20 0.0022 0.14 13.6 0.6 1 23 362 384 362 384 0.97 12 20 9.8e-05 0.0061 17.9 3.2 1 23 390 412 390 412 0.99 13 20 0.25 16 7.2 3.4 2 23 419 440 418 440 0.95 14 20 0.0044 0.27 12.7 2.0 1 23 495 517 495 517 0.96 15 20 0.013 0.83 11.2 5.4 1 23 521 543 521 543 0.98 16 20 0.032 2 10.0 0.3 1 23 549 571 549 571 0.97 17 20 0.0072 0.45 12.0 0.9 1 23 577 599 577 599 0.97 18 20 0.00033 0.02 16.2 1.4 1 23 605 627 605 627 0.98 19 20 5.4e-05 0.0034 18.7 0.4 3 23 636 656 634 656 0.97 20 20 0.0015 0.096 14.1 2.3 1 23 662 685 662 685 0.95
Sequence Information
- Coding Sequence
- ATGCGTTTTATTTCCAGGTTAATTACAGTAAGGATTTTCGTGCCTTCTGAAGACAACGAGAGGATCTCGCCCACCATAAAAACGGAAACGGAGGAAGCGCCGGAAGTTGACGAGAAACAATACGTGTGCGAGTTTTGCGGTTTTAAAACGCACAAACCTCAAAACCTGAAGAGGCACCTCAACAAACACCGGAGTTCGTTTCAGTGCGACCGCTGCGGTAAAACGTTCACGTCGCGCGTGAATTTAAAAGTGCACATAAGCCGACATACCGGGGAGAAACCGTACAAGTGCAGGGTTTGCGATTACAGAGGCGCTCAACCTTGCGATCTGTACGCGCACGTGAAGATACACACCGGCGCGAAGCCTTTTCACTGCGACAAATGCGATTACAGGTGTGCCGTCAAGGCCGACCTCGGGAAGCACATGGTTTCGCATTCCACGGAGAAACCGTTCGGGTGTGAGGCGTGCGGTTTCAAGACGAAAACCTCCGGGCGTTTAAAGGCGCACAAGagaacgcacaccggcgagaagacGATCGAGTGCACCGTGTGCAATAAGAGATTCGCCGATTCCAGAGACTTGAAAAGGCACAGGTTGATACACGcaggcgagaaaccgttcgcgTGTAATTTATGCGATTACAGATCCACCCAGCGGGCAAACGTGAAAGCGCACATCAAACACAGACACAAGGAATGCAACGAAGTGGCCGCAAATGTAATTGAAACGACgtTAATTACAGACAGCGTTGCTGTACCTTCCGAAGAAAACGAGGGGGTTCCACCttctataaaaaaagaaacggcgCATGCGCAAGCGCAAGTTGAAGAAACTCAATTCGTGTGCGAGTTTTGCGGTTTTAAAACGCACAAACCTCAAAACCTGAAGAGGCACCTCAACAAACACCGGAGTTCGTATCAGTGCGACCGTTGCGGTAAAACCTTCACCTCGCCCGTGAACTTGAAAGTGCATATGAGCCGACATACCGGGGAGAAACCGTACAAGTGCAAACTCTGCGATTACAAGGCCGCCCAATCCTGCGATCTTTACGCGCACGTCATGGTGCACACCGGCGCGAAGCCTTTCCAGTGCGACAAGTGCGAGTACAGGGCGTCCCGAAGGGGTAGCGTCAGGAAACACATGGTCATACATTCCCCGGAGAAGCCGTTCAAGTGTAACATCTGcgatttcgaaacgaaaaccGACAAGACCTTGAAGAGACACCAGagaacgcacaccggcgagaagacGGTCGTATGTAGCGTTTGCGCCAAGAGATTCACTTGTTTCACGCACTTGAAGAGACACGCGCTGATACAcgccggcgagaaaccgttcgcgTGCGACTTGTGCGACTACAAATCGACTCAGCGgttgATTACGAAAAGCAATGGCGCCGCCGAAAGTACTCGTACATCCCCGGAAAAGAACGAAACCGTTTTGAGAGTGAACTGTGATCCCCCTGATACTActaaaaaacaatttgcatgTAAGATCTGCAACTTTAAGACGGATAGATCTGAGTATCTCAAGAAACACGAGAGTAGACACGAGAAGCCGCATCAGTGCGATCGCTGCGGCGGCAGGTTCACCACGAGCACCGGCTTGAAGTGTCACATGAGGCGacacaccggcgaaaaaccCTACAAGTGCAagctttgcgattataaatccgCCCAGGCCACGCCGCTCTGGATGCACAGCAAGATACACACCGGCGCGAAGCCCTTCGAGTGTGCCAAGTGTAATTACAGGTGTGCCGTAAAAGCCGACCTTGGGAAGCACATGGTCAAGCATTCGACGGAAACGCCGTTTGAGTGTGAGCTCTGcggttttaaaacgaaaaccTCGGGGCGTTTGAAGGCGCACAAGaggacgcacaccggcgagacgAAGAGGATCGATTGCACCGTGTGCAATAAGTGGTTCACCGATTCCAAGGATTTAAAAAGGCACATGTTGATACACGCAGGCGAAAAGCCGTTCGCGTGTAACCTATGCGATTACAGGTCTACCCAGCGGTCGAATGTGAAAGCGCACATCAAACACAGACACAAGGAATGCAAGGAAGTAGCTGCGAATATAACTGAAGCAACACGAGATGCAAGCtga
- Protein Sequence
- MRFISRLITVRIFVPSEDNERISPTIKTETEEAPEVDEKQYVCEFCGFKTHKPQNLKRHLNKHRSSFQCDRCGKTFTSRVNLKVHISRHTGEKPYKCRVCDYRGAQPCDLYAHVKIHTGAKPFHCDKCDYRCAVKADLGKHMVSHSTEKPFGCEACGFKTKTSGRLKAHKRTHTGEKTIECTVCNKRFADSRDLKRHRLIHAGEKPFACNLCDYRSTQRANVKAHIKHRHKECNEVAANVIETTLITDSVAVPSEENEGVPPSIKKETAHAQAQVEETQFVCEFCGFKTHKPQNLKRHLNKHRSSYQCDRCGKTFTSPVNLKVHMSRHTGEKPYKCKLCDYKAAQSCDLYAHVMVHTGAKPFQCDKCEYRASRRGSVRKHMVIHSPEKPFKCNICDFETKTDKTLKRHQRTHTGEKTVVCSVCAKRFTCFTHLKRHALIHAGEKPFACDLCDYKSTQRLITKSNGAAESTRTSPEKNETVLRVNCDPPDTTKKQFACKICNFKTDRSEYLKKHESRHEKPHQCDRCGGRFTTSTGLKCHMRRHTGEKPYKCKLCDYKSAQATPLWMHSKIHTGAKPFECAKCNYRCAVKADLGKHMVKHSTETPFECELCGFKTKTSGRLKAHKRTHTGETKRIDCTVCNKWFTDSKDLKRHMLIHAGEKPFACNLCDYRSTQRSNVKAHIKHRHKECKEVAANITEATRDAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -