Pinq002902.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069869.1:65685631-65688296[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.4 1.5e+02 4.1 1.0 2 19 173 190 172 191 0.96
2 20 0.042 2.6 9.6 4.8 1 23 197 219 197 219 0.98
3 20 0.0045 0.28 12.7 0.4 2 21 275 294 274 295 0.95
4 20 0.0017 0.1 14.0 1.9 1 23 299 321 299 321 0.98
5 20 0.077 4.8 8.8 3.2 2 21 357 376 356 377 0.94
6 20 0.0049 0.31 12.5 1.3 1 23 381 403 381 403 0.98
7 20 0.00028 0.017 16.5 0.3 1 23 410 432 410 432 0.94
8 20 4.1e-05 0.0025 19.1 3.9 1 23 438 460 438 460 0.98
9 20 0.00028 0.018 16.4 0.2 3 23 471 491 470 491 0.99
10 20 0.0017 0.11 14.0 0.2 2 20 523 541 522 543 0.95
11 20 0.017 1.1 10.8 1.1 1 23 547 569 547 569 0.98
12 20 0.028 1.8 10.1 1.5 2 20 591 609 590 611 0.94
13 20 0.0039 0.25 12.8 1.2 1 23 615 637 615 637 0.97
14 20 0.001 0.063 14.7 0.8 1 23 643 665 643 665 0.94
15 20 3e-07 1.8e-05 25.8 1.2 1 23 671 693 671 693 0.99
16 20 0.00064 0.04 15.3 2.9 1 23 702 724 702 724 0.97
17 20 0.00087 0.054 14.9 1.4 1 23 737 759 737 759 0.92
18 20 0.00055 0.034 15.5 7.7 1 23 766 788 766 788 0.98
19 20 3.7e-07 2.3e-05 25.5 1.5 1 23 794 816 794 816 0.98
20 20 7.8e-05 0.0049 18.2 2.4 1 23 822 844 822 844 0.98

Sequence Information

Coding Sequence
ATGGCTAAAATATGCAGACTTTGCTTGAAAATAACGGACGAAGCATTTTATTTCATCGATGATAACGCCGCgataaaaaacagaaacaaaatctCGATTTTAATGCCGGAACTGGCGTTAGATGTTGTACCTGACCCCATTATTTGCTCCTTGTGTTACGGTACGTTACAGGTTGCTTACGAATTCAAGCGCAACTGTCTAGCCAACGAGCAAAGGCTCACCGATTACTTGAGGAATAACAAGAATCGTCTCATTAATTTATGCGATTTGTTAGTGGGAAACGAGTCAAAAAGTGTGTTTGCAGAAAACTTTCCAGGTGACAGTTATGAAGCAGACGAAAACACGTCGTCTTTGGTACATATAAAAGAGGAAAACGAATACAAAACAGAGCCTTCGGAACCTCCCTGCGAATTTGAATGCGTTTACCAAGATTCATACCGAGAAACAAACAATGAAGAAAAGGATGGGAAAGTAAATAATGAGAATAAAACTAGTGAACTCCCAGTTAAGTGTATTAAATGCTCAAGGTGCGCTCATGAATTTACTGCTTGGAAGGACTATAAAAAACACTCGGTACAATGTGCTCCATATGAGTGCGATGTGTGTAACAAGAAGTTTAAGTTAAACTGTAGATTTCTGAAACATAAGGCAACACATGATGCAAATACTGAAAAGAGTGTACCTGGAGATTCAACTAGTGAAACAAATACAAGCTCAAACCCCaatgaacaagaagaagaagaagaagaacaagaagaaggtGAGGAAGTGGATGACAAAACAGATAAAAACAGCAGCGGGGGTTTAATTAAGGGGCGTGTTAAATGCTCAAACTGCTCAACTGAATTCACAGTTTGGAAAGATTACAGAAAACACATAAAACTATGTGCTCCTTACAAGTGCGAcgtctgtaataaaaaattcataaaagaagGTAGGTTTTTACGACATAAACTAATGCATAAAGCAGGTGCAGGGAAAAATGATGATGTACAAGCAGATTCCCATAGGACTGAAGAAGACTGCGCAGGAGACAAAAGCGATGAAGCTGAAATTAATGTCGGCATTAAGTGTTCACGGTGTCATAATAAATTCATGCAGAAGAGAGATTACAGGAGGCACATACAAAAGTGTGCACCTTATCAATGCGACGtgtgcaataaaaaatttatgctGGAAACCAGACTTGAACAACATAAGCTCACGcataaaaaagaacagaaaacgtTCCTGTGTGAGATATGCAGTAAGACTTTCCGGCAAGCTTACCTCCTGGGGCAGCATCTTCTGTTGCATTCCGGCTTGAAGCCCTATAAATGCCAGAAATGTGACAAAGCGTTTGCAACACGAAATCACTTCCGCATGCACCAACAGGCGCacttaatgaaagaaaaaagaaacgtgcACGGATGTGATATGTGTGAAAAGAAATTCCCCAACGTTCAGTTGTTGTGGAGACACATCAACACCCATTCCTACGTAAACCTGAACAAAGAAACGAgtcatgaaaaagaaaaagatgaaccGGGGAATAAAACGTGTTCGTCTCTCATCAGGGGCAGTGTTAAGTGTTCGAATTGCTCCACCGTATTCGTAGATTGGAAGGAGTATAGGAATCACATGGATCAGTGTGCTACATACGAGTGCGATATTTGcctaaaaaaattcataaaagaagGTAGATATCTCAAACACAAATTGACACATAAAGATACCGAGGAAACAAACATGGAAGGACAAACCGGCGAAACTGAGATTAATGTCGGCATTAAATGCTCGATCTGTCACAATAAATTCATGACCAAGAAGGATTACAGGAAACACGTTGATCAATGTGCTCCGTATCAGTGCAGTGTATGCGGCAAAAAGTTTATTTTGGAAACTAGATTTGAGCAACATAAGCTGTCGCATAAGGAAGAGAAGACGTTCTTGTGTGATGTGTGCAGTAAGACTTTTAAGAAATCGTATTTGCTGGGGCAGCACCTCCTCCTGCATTCGGGCCGAAAACCATATCAATGTCCGACGTGTGGCAAGGCGTTTCCAACCAGAAACCAGTACCGAATGCATCAACGTACACATTTAACCAACCCTAAGGAAAGAGGGCACACATGTGAAATCTGCCAGAGAAAGTTTCCTAGCCTGCAGTTTTTGCGAAGGCACACGAGAGCTCACTTACAGGAGAAGAAGATGCATACAGGGGAAGAGCCTTACAGTTGTGATgATTGCGGGGAGAGGTTTAATTTGAAAAGCGATTTGCACGTGCACTCGTTTTTACACACGGAGAACGCCAGGAGATTTCCTTGCTTGTACTGCCACAAAACGTTTTTCCTTAGCAAGCACCTGAAGCGACATATTAAAAGGCACGTAGAACTGCCGTCGCATGTTTGTGTAATTTGTGGGAAGCGTTTCGGTGAGTCTAGTTCGTTGAAGAGACATATGAGAACGCACACGGGTGAAAAACCTTTCGAATGCGAAGTCTGTCACGAAAAGTACAGGTATCAATACACTTTGTTAGTGCACATGAAAATGCATTCAGAGGACACttga
Protein Sequence
MAKICRLCLKITDEAFYFIDDNAAIKNRNKISILMPELALDVVPDPIICSLCYGTLQVAYEFKRNCLANEQRLTDYLRNNKNRLINLCDLLVGNESKSVFAENFPGDSYEADENTSSLVHIKEENEYKTEPSEPPCEFECVYQDSYRETNNEEKDGKVNNENKTSELPVKCIKCSRCAHEFTAWKDYKKHSVQCAPYECDVCNKKFKLNCRFLKHKATHDANTEKSVPGDSTSETNTSSNPNEQEEEEEEQEEGEEVDDKTDKNSSGGLIKGRVKCSNCSTEFTVWKDYRKHIKLCAPYKCDVCNKKFIKEGRFLRHKLMHKAGAGKNDDVQADSHRTEEDCAGDKSDEAEINVGIKCSRCHNKFMQKRDYRRHIQKCAPYQCDVCNKKFMLETRLEQHKLTHKKEQKTFLCEICSKTFRQAYLLGQHLLLHSGLKPYKCQKCDKAFATRNHFRMHQQAHLMKEKRNVHGCDMCEKKFPNVQLLWRHINTHSYVNLNKETSHEKEKDEPGNKTCSSLIRGSVKCSNCSTVFVDWKEYRNHMDQCATYECDICLKKFIKEGRYLKHKLTHKDTEETNMEGQTGETEINVGIKCSICHNKFMTKKDYRKHVDQCAPYQCSVCGKKFILETRFEQHKLSHKEEKTFLCDVCSKTFKKSYLLGQHLLLHSGRKPYQCPTCGKAFPTRNQYRMHQRTHLTNPKERGHTCEICQRKFPSLQFLRRHTRAHLQEKKMHTGEEPYSCDDCGERFNLKSDLHVHSFLHTENARRFPCLYCHKTFFLSKHLKRHIKRHVELPSHVCVICGKRFGESSSLKRHMRTHTGEKPFECEVCHEKYRYQYTLLVHMKMHSEDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-