Pinq013149.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069873.1:4168542-4170672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.82 11.2 1.7 1 23 141 163 141 163 0.98 2 12 0.068 4.2 9.0 0.4 1 23 179 201 179 201 0.98 3 12 6.3e-05 0.0039 18.5 3.7 1 23 207 229 207 229 0.97 4 12 4.1e-06 0.00026 22.2 3.6 1 23 235 257 235 257 0.98 5 12 2.6e-05 0.0016 19.7 0.9 3 23 268 288 266 288 0.96 6 12 1.5e-05 0.00094 20.4 0.3 2 23 295 316 294 316 0.96 7 12 3.1e-08 1.9e-06 28.9 2.6 1 23 322 344 322 344 0.99 8 12 2.1e-07 1.3e-05 26.3 3.6 1 23 350 372 350 372 0.98 9 12 6.3e-06 0.00039 21.6 1.7 1 23 378 400 378 400 0.98 10 12 2.3e-05 0.0014 19.9 1.4 1 23 406 428 406 428 0.94 11 12 6.7e-07 4.2e-05 24.7 0.1 2 23 435 456 435 456 0.97 12 12 6.3e-06 0.0004 21.6 0.3 1 23 462 484 462 484 0.97
Sequence Information
- Coding Sequence
- ATGAATAATGAAGCAATTGATTTCAATCACATTTGCAGAACCTGCCTGTCATTCGAAATCAACTTGGTTAACCTATACGAGACGAACGTCGCACACATGATGAACTTCTGCCGCTTCGTTCGGGAGGTATCACCAAACGACGGTTATCCAAGTAATATTTGCCTGCGTTGTCAGGAGACGATAATCATAAGTTACAATTTCAAGCAGCAATGTGAAAAGTCACAGGCCACATTATTTTCCTACATTTCCAAAGAGCCTTTGGTGGCTAAAACCAATGCGTGTTTGTTGGAAATCGAGGGAATACACACCGAGCAAGTAAGTCTTGGTGATGGTAAAACTGCAGGCGTTGTTGAGTGTGAGCAAcgcattaaaaataatcacaaagGATCAAACAATGTAGAAAGCAAAATTGCTGCGAGTTTCAATTGCGATCAGTGTGAAGAGAAGTACTGTAACGAAGCGGATTATTTGTTACATCAAAGCACTCACACCAAAACGATTGCAAAAGATGAAGATCCACCACCGCCGCTGCCATTCCCGTGCTCCGAATGCATCCAGTCTTTTAACGCCGAAGCCGACCTTCACTTACATCAATCCACGCACACGAAATCAGGCGAACATGTTTGCGCACGTTGCACCAAGAAATTCGCAACACGTCAGATGTTAAAAAGACATATTAAAACACACATGATTCATAAACCTCATACTTGTCAACAGTGTGGGAAAGGCTTTGCAGAATCTCACGCCCTAACCAAACACATGCGCAGGCACACGGGACAGCCGAGGGAGAAAAAGCATTTGTGTACAGTTTGCGGACAAGGCTTTTCAGAACCTTTCTACCTGAACGTGCACATGCGAAAGCACACGGGCGAAAGGCCCCTGATGTGCTCTTCGTGTGGAAAATCGTTTGCAGACCCGCGTTCCTTGAAGGCACACAACATGACGCACACGGGGGAACGACCGTATAAGTGTCACCTTTGCAACAAGGCTTTTAGTCAAAGTGTAAACCTAACGAAACACATCAGAGTGCATACGGGGGAAAAGCCGTACATCTGTTCGAAATGCGGAAAGTGTTTTACGCAGTCGTCTAGTTTAGATAAGCACGTGCGAACGCACACTGGGGAAAGACCGTATGCTTGCGATCAGTGCCCCAGAAGATTTACTGAGAAAGGAACGCTAATCCACCACCAAAGAACTCACACCGGTGAAAAACCTTACGTCTGCGCACACTGTGGAAAGTCGTTTTCGAGTTCCTCCGTCTTGAGAGTGCACGATAGGAAACACACGGGTCTCAAAAAGAATGTTTGCAGTGTATGCGATAAGGACTTTGCAACGCCAAGCAATCTCGTGGTGCACTTGAGGACCCACAGCGGGGAGAAACCGTTTTCCTGTTACATTTGTGGTCGACCGTTCGCTGATAAGGGTTCGCTTAGAAAACACTCGAATATACACTACAGGGAAAACCAAAAATGCCAGTAA
- Protein Sequence
- MNNEAIDFNHICRTCLSFEINLVNLYETNVAHMMNFCRFVREVSPNDGYPSNICLRCQETIIISYNFKQQCEKSQATLFSYISKEPLVAKTNACLLEIEGIHTEQVSLGDGKTAGVVECEQRIKNNHKGSNNVESKIAASFNCDQCEEKYCNEADYLLHQSTHTKTIAKDEDPPPPLPFPCSECIQSFNAEADLHLHQSTHTKSGEHVCARCTKKFATRQMLKRHIKTHMIHKPHTCQQCGKGFAESHALTKHMRRHTGQPREKKHLCTVCGQGFSEPFYLNVHMRKHTGERPLMCSSCGKSFADPRSLKAHNMTHTGERPYKCHLCNKAFSQSVNLTKHIRVHTGEKPYICSKCGKCFTQSSSLDKHVRTHTGERPYACDQCPRRFTEKGTLIHHQRTHTGEKPYVCAHCGKSFSSSSVLRVHDRKHTGLKKNVCSVCDKDFATPSNLVVHLRTHSGEKPFSCYICGRPFADKGSLRKHSNIHYRENQKCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -