Pinq024077.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:44844443-44854161[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0016 0.1 14.1 0.4 1 23 43 65 43 65 0.98
2 25 0.0024 0.15 13.5 1.5 1 23 71 93 71 93 0.98
3 25 0.0013 0.081 14.4 1.8 1 23 99 121 99 121 0.96
4 25 6e-05 0.0037 18.6 1.8 1 23 127 150 127 150 0.94
5 25 0.0052 0.32 12.5 1.9 1 23 156 178 156 178 0.98
6 25 0.00034 0.021 16.2 4.4 1 23 184 206 184 206 0.99
7 25 2.1e-05 0.0013 20.0 3.8 1 23 212 234 212 234 0.99
8 25 0.0005 0.031 15.7 3.3 2 23 241 262 240 262 0.97
9 25 0.00092 0.057 14.8 2.0 1 23 268 290 268 290 0.98
10 25 0.02 1.3 10.6 2.6 1 23 296 318 296 318 0.99
11 25 0.009 0.56 11.7 5.2 2 23 324 345 323 345 0.97
12 25 0.011 0.69 11.4 1.0 2 23 392 413 391 413 0.96
13 25 1.1e-06 7.1e-05 24.0 3.3 1 23 419 441 419 441 0.99
14 25 0.052 3.3 9.3 0.5 1 23 447 471 447 471 0.98
15 25 0.037 2.3 9.8 0.4 1 23 476 498 476 498 0.98
16 25 0.00041 0.026 15.9 2.6 1 23 504 526 504 526 0.97
17 25 0.13 7.9 8.1 6.4 2 23 533 554 532 554 0.96
18 25 0.034 2.1 9.9 8.7 2 23 561 582 560 582 0.97
19 25 2.7e-05 0.0017 19.7 0.8 1 23 586 608 586 608 0.99
20 25 0.0011 0.07 14.6 4.4 2 23 614 635 613 635 0.97
21 25 0.036 2.2 9.8 1.6 2 23 641 662 640 662 0.96
22 25 0.00079 0.05 15.0 0.4 3 23 694 714 692 714 0.96
23 25 0.00068 0.043 15.2 0.6 1 23 720 742 720 742 0.98
24 25 0.012 0.76 11.3 8.3 1 23 751 773 751 773 0.98
25 25 0.11 7 8.3 1.4 2 23 780 802 779 802 0.95

Sequence Information

Coding Sequence
ATGTCGTTCGACAGCGTCGGTAATGCAGAGCGCAGAGCTGCAGAgagGCGCATCACTAAAACTGACTTTGAAAATGTATTTCATGTCTCGAGTCCTTCTGAACTGCACCACAATCTCGAAAACCGGTACTCATGCAAAATTTGCGACGGCAAGTATGCAAATCAAAGGAAGTTAGAAATTCACGTCCTGAaacataccggcgagaaaccaTTCAAATGTGACGTGTGCGATTTTAAAAGTGCGCACCCGCATGCTTTGAAAGCACACGCAtcgacgcacaccgacgagaaaccgttcaagtGCGGCGAGTGCGATTACAGGTGTAAAGTGCGCGGAAACTTACGCCAGCATTCAATAGtgcacaccaacgagaagcccTTCGAATGTAACATTTGTGATTTTAAATGCAGCAGTTCGCAGAATTTAAAGCGGCACATTTCGGGGGCGCACACCGACGAAAAACCTTTCGAGTGCACCGAGTGCGATTACAGGTGCAACGAGCGCGGAAGGTTAAGCCGACATTTGGCGACGCACAAAAACGAAAAGCGTTTCAAATGTAGCGCGTGCGATTTTCGATGTAGAACTTCGCAGAATTTGAAACGCCACATTTTGACGCACACCGATGAAAAGCCGTTTAAGTGCAGCGAGTGCGATTACAGGTGCAAGGAGCAAGGAAACTTAAGTCGTCACTTAAGGACGCACAATAACGAAAAGCCTTTGCAATGCAACGCGTGCGATTTTAGGTGCAGGACTTCGCAGAATTTAAAGAGACACATCCTGACGCACACCGATGAGAAACCGTTCGAGTGCGGCAAGTGCGATTACAGGTGCAGCGTGCGTGAATATTTACGTCAGCACTTAATGATACACAatgacgagaaaccgtttaagTGCGACAAATGCGATTTCGGTTGCAGACGACGCGCAATTTTAAATCAACACTTACTGACGCACACCGAAATGCTATTGAAATGTAACGTGTGCGATTTTAGGTGTAGGACTTCGCACGTTTTAAAAAGACACGTTTtgacacacaccgacgagaaactgTTGAAATGCGGCGAATGCGATTACGTTACCACAAAACGCAGatgCAAAGAAACTATCTTTCGTAAGAGTTGCGCCGTCGTTCTGACCCGCGTCGAGGAACAACTGAAGAGCGAAAACCTGCTCAGATGCGTCGTCTGCAATTACGAGTGCGACAAGTCGTCCAAATTAAAAGCTCACGTGGCGACGCACACCGGTGAGAAACCGTACACGTGCAACATATGCGAACGCAGGTTCAGGACGAAGCACAATTTGAAAGCGCACGTgctgacgcacaccgacgagaaaccgtttaaaTGCGGTCGCAGCGACTGCGAGTACGGAGCCCGGACCCGCACCGCGCTAAAAATACACCGGATGAGACACGCGGAAGATTGGTTCGAATGCGGCGCTTGCGATTACAAAACCAAAGTTGCCAACCGCTTAAAGCGGCACGTGATgacgcacaccgacgaaaaACCTTACGCGTGTGACGCCTGCGACTTCAAATGCAGAAGAAAATCGTATTTACAGGATCACATGCTGACGCATACCGGTGAGAAACCGTTAACGTGCAGTCTCTGCGAGTACAGGTGCAGATCGCGCGAGTGTTTGCGCAAGCATTACATAAGACACGACGGCGAAAAGCTCCTGAAGTGTACTCTGTGCGAGTACACGTGCGTGCGACGTTGCCATTTGAGAACGCACATGTTGAAACACACGAGCTCGTTCAAATGCGGCGTCTGCGGTTATGCGTCTACCTCGTCGAAATTTTTGAACAGGCACATGAAAGTGCACGTCGAGAAGCCGCTTAAGTGCGCCACCTGCGATTACCGTTGCAGGTACCGTTCCCATTTAAAGGCACACTTGGCAACGCACGACATCAAAAAACTCAAGTGCACCTTCTGCAATTACAAGTGTGTTCTGCCGGCACTTTTAAAAAAGCACGAGGCGACGCATGCAGCAGCGAAGCACGGAGGTATGAAGCAGCATATTATGACACATGCCGatgaaaaaactgtaaaaatgtttgcCGGCGAAAAGCTTCTCGCGTGTAACCTTTGCGAATACAAAACTCGAAAAGCCAGCAACTTACGAATACACCAGgcgacgcacaccgacgagaaacggTACGAGTGCGGTACTTGCGGCGAAAAGTTTAGGTACCCACAGGTTTTCAAGAGTCACATGGTTAAGCACATGGACGTGAAGCCGGAGAAAGCGTTCAAGTGCGACTTTTGCGATTACCGCTGCGATTTTTCCTCGCAGTTAAAGAAGCATCACATGCGACACACCGGTGAGAAACCGCTCAAGTGTGAACTCTGCGATTACAGTACCGCTTGGCACTCGACATTAAAGAGGCACGTGCTCAAGCAACACACCGACGACATCAAACTGTCATCATCATAA
Protein Sequence
MSFDSVGNAERRAAERRITKTDFENVFHVSSPSELHHNLENRYSCKICDGKYANQRKLEIHVLKHTGEKPFKCDVCDFKSAHPHALKAHASTHTDEKPFKCGECDYRCKVRGNLRQHSIVHTNEKPFECNICDFKCSSSQNLKRHISGAHTDEKPFECTECDYRCNERGRLSRHLATHKNEKRFKCSACDFRCRTSQNLKRHILTHTDEKPFKCSECDYRCKEQGNLSRHLRTHNNEKPLQCNACDFRCRTSQNLKRHILTHTDEKPFECGKCDYRCSVREYLRQHLMIHNDEKPFKCDKCDFGCRRRAILNQHLLTHTEMLLKCNVCDFRCRTSHVLKRHVLTHTDEKLLKCGECDYVTTKRRCKETIFRKSCAVVLTRVEEQLKSENLLRCVVCNYECDKSSKLKAHVATHTGEKPYTCNICERRFRTKHNLKAHVLTHTDEKPFKCGRSDCEYGARTRTALKIHRMRHAEDWFECGACDYKTKVANRLKRHVMTHTDEKPYACDACDFKCRRKSYLQDHMLTHTGEKPLTCSLCEYRCRSRECLRKHYIRHDGEKLLKCTLCEYTCVRRCHLRTHMLKHTSSFKCGVCGYASTSSKFLNRHMKVHVEKPLKCATCDYRCRYRSHLKAHLATHDIKKLKCTFCNYKCVLPALLKKHEATHAAAKHGGMKQHIMTHADEKTVKMFAGEKLLACNLCEYKTRKASNLRIHQATHTDEKRYECGTCGEKFRYPQVFKSHMVKHMDVKPEKAFKCDFCDYRCDFSSQLKKHHMRHTGEKPLKCELCDYSTAWHSTLKRHVLKQHTDDIKLSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-