Pinq024445.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49600911-49607147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0072 0.45 12.0 0.9 2 23 10 33 9 33 0.95 2 30 0.0007 0.044 15.2 3.8 2 23 40 61 39 61 0.97 3 30 0.0024 0.15 13.5 2.2 1 23 67 89 67 89 0.98 4 30 7.8e-06 0.00048 21.4 2.3 1 23 95 117 95 117 0.98 5 30 2.7 1.7e+02 3.9 6.2 1 20 123 142 123 144 0.93 6 30 0.0041 0.26 12.8 0.7 1 23 165 187 165 187 0.97 7 30 0.0026 0.16 13.4 4.3 1 23 193 215 193 215 0.97 8 30 0.025 1.6 10.3 1.4 3 23 223 243 221 243 0.98 9 30 0.0014 0.088 14.2 1.8 1 23 249 271 249 271 0.95 10 30 0.00096 0.06 14.8 0.8 1 23 277 299 277 299 0.97 11 30 0.2 12 7.5 0.2 3 23 307 327 305 327 0.96 12 30 0.072 4.5 8.9 3.1 1 19 333 351 333 353 0.94 13 30 0.0069 0.43 12.1 0.9 2 23 373 394 372 394 0.96 14 30 3.1e-05 0.0019 19.5 2.7 2 23 401 422 400 422 0.97 15 30 0.0041 0.26 12.8 1.3 2 23 431 452 430 452 0.96 16 30 0.0024 0.15 13.5 4.8 1 23 458 480 458 480 0.98 17 30 7.3e-06 0.00046 21.4 1.4 1 23 486 508 486 508 0.98 18 30 0.00052 0.033 15.6 0.7 1 23 514 536 514 536 0.98 19 30 2 1.2e+02 4.3 7.4 1 23 542 564 542 564 0.97 20 30 0.01 0.64 11.5 1.7 1 23 570 592 570 592 0.97 21 30 0.02 1.2 10.6 2.7 1 23 598 620 598 620 0.97 22 30 0.00055 0.034 15.5 1.7 1 23 626 648 626 648 0.98 23 30 0.0011 0.067 14.6 2.4 1 23 654 676 654 676 0.97 24 30 0.0022 0.13 13.7 4.7 1 23 682 704 682 704 0.96 25 30 1.3 78 5.0 3.4 1 23 710 732 710 732 0.96 26 30 0.0035 0.22 13.0 2.0 3 23 740 760 738 760 0.98 27 30 0.034 2.2 9.9 2.5 1 23 766 788 766 788 0.95 28 30 0.004 0.25 12.8 2.5 1 23 794 816 794 816 0.96 29 30 0.0095 0.59 11.6 0.2 1 23 822 844 822 844 0.96 30 30 0.0037 0.23 12.9 1.6 1 23 850 872 850 872 0.97
Sequence Information
- Coding Sequence
- ATGACGCACGCCGACGAGAAGCAGTTGAAATGCACCGTCTGCAAGTACAAGTACAAGTTCCGGCGAGCCGGCGGCCTGGCGCGGCACATGCTCAAACACGCCCAGGACACCATGCTCAAGTGTAAAATCTGCGATCACGTGTGCACCACACGTCGCTACCTGAAAGAGCACATattaatacacaccgacgagaagcccttTCGCTGCaatctctgcgattacaagaGCCGATTTGCCCGAAACTTAAAGCAACACGTGTTGAAACACGTCGACGAGAAGCGGTTCAGATGCGCTCATTGCGATCGCAAGTTCCGCTACGCCTACGACTTAAAAGCGCACGTGATGacacacaccggcgaaaagcGTTTCCATTGCGCGACGTGCGATTTTAGATGCCGATCTAGGGTAACCTTGAAAAAGCATAGCTGCATACGCGCTTCTAAATGCCGGGAGGAAAAGACTTTGAAggtaacgcacaccgacgagaaaccgttcgcttgcgatctttgcgactTCAGGAGCGTAAACAAGAAGAGCTTGAAAAACCACGCgctaacgcacaccggcgagaaaccatTCAGCTGTAATCTATGCGATTACCGATGCACATTCAAGTACAGCCTGAAAAAGCACGCGTTAATACACACCGGAGAGAAACCGTTcggctgtgatctttgcgattacaggtGCCGAGGGGCCGGGGGATTGAAACTGCACAGGCGgaagcacaccggcgagaagcctttcgcctgcgatctctgcgattacagATGCCGAAACAAGGAGTATTTGAAGGCGCACGTGGTGAAACACACCGGCGACAAGCCGTTTTGTTGCGAGATTTGCGGCGGCGAGTTCGCGAGCAGGAACTCCCTGAGGCAGCACACTCTGATACACGCCGGGGAGAAACCGTTCGgctgtgatctctgcgattacaagaGCGTAAAGGCGGGAAGTTTGAAGCAGCACAGCTTGGTGCACACCGGCGAGAGGCCCTTCGCGTGCGATCTATGCGATTACAAGTGTCGCAAGAACGTGAGCCTGAAAAGGCACAAATTCCAACGGCCTTCTTCAAAACCAATCATCAAAACCGAAACCGCCGAGGAAAAAACCCTCGAATGTCGCGTGTGCAGTTCTAAATTTGAAACTCAGGCGTATTTCAAAAGGCACGTCTTGACACACGCCGACGAGAAGCAGCTGAAATGCACCGTCTGCAATTACGAGTTCCGCCGAGCCGGCTGCCTGACACGGCACATGCTCAAACACGCCCGCGACACCCCGCCCCCCCTCAAGTGTAACATCTGCGATTACGAATGCGGCACGCGTCAGTActtgaaacaacacgtgttgatacacaccgacgagaaaccctTCTGctgcgacctctgcgattacaagtgccgcgTCGCGCAAAATTTAAAGTCGCACATGTTAACGCACACCGGAGAGAAGCCGTTCGTctgcgacctctgcgattacaaattcAAGCGACCTGTCAGCTTAAGACGGCACAGGTTGAAACACGCCGACGGTAAACACTTCACCTGCACCTTCTGCGATCAAAGCTTCCCCTCCGCCGACCGTTTGAAACTTCACGCGACGACCCACACGGGCGAGAATCGTTTCCACTGTGCGCTTTGCGACTTCAAATGCCGCTTCAAGGTAACCATGAAGCAGCACATGTTTACGCACACGGGCGATAGACCGTTCAACTGCgagctttgcgattacaagtgcctaCAAGCAGGGAGTTTGAAACAGCACATGCTGACACACACGCACGAGAAGCCTTTCGCttgcgacctttgcgattacaagtgccgggTAAAAGAATCCCTGCGATTGCACAAGTTGAAACACACCGGCGATAAGCCTTTCCGCTGCGCGATTTGCGATTTCAAGTGCATCTACAGGAAGAACTTGGAGGTGCACATCTTAACGCACAGCGACGACagaccgttcagttgtgacctctgcgattataagtgcgtGCAGGCCGGGAGCTTGAAACGGCACAAGTTgaggcacaccggcgagaagcccttcgcctgcgatctttgcgattacaagtgccggcACAAGGACTCCTTGAAACTGCACATGGTAAAACACGCCGGCGGTAAGCCGTTTCGTTGTAAGATTTGCAATTCCGAATACTTGCACGAGAAGAGCTTGCGAAAACACtttttaatacacaccggcgaaaaaccattcggttgcgatctttgcgattacaaatgccgacaggCCGGGAAATTGAAGCTTCACATGCtgaaacacaccggcgagaagcctttTGCTTGCGACCTCTGTGATTATCGCTGCCGAGAGAAGGAATATTTGAAAGTGCACAAGGTGAAACACAGCGGTGATAAACCGTTTTGTTGTGAGATTTGCGACGGAAAGTTCGTGAGCAGGCACTCCTTGAGGCAGCACGctttaatacacaccggcgagaaaccgttcagctgtgatctctgcgattacaagaGCGTCAAGGCCGGAAACTTGAAACAGCACAGCATAGTGCACACCAGCGAGAAGCCTTTCGcgtgcgatctttgcgattataagtccCGTAAGAACGTGAGCCTAAAAAAACACAAGTTGACACATCAACGAGGAGCCGTTTAG
- Protein Sequence
- MTHADEKQLKCTVCKYKYKFRRAGGLARHMLKHAQDTMLKCKICDHVCTTRRYLKEHILIHTDEKPFRCNLCDYKSRFARNLKQHVLKHVDEKRFRCAHCDRKFRYAYDLKAHVMTHTGEKRFHCATCDFRCRSRVTLKKHSCIRASKCREEKTLKVTHTDEKPFACDLCDFRSVNKKSLKNHALTHTGEKPFSCNLCDYRCTFKYSLKKHALIHTGEKPFGCDLCDYRCRGAGGLKLHRRKHTGEKPFACDLCDYRCRNKEYLKAHVVKHTGDKPFCCEICGGEFASRNSLRQHTLIHAGEKPFGCDLCDYKSVKAGSLKQHSLVHTGERPFACDLCDYKCRKNVSLKRHKFQRPSSKPIIKTETAEEKTLECRVCSSKFETQAYFKRHVLTHADEKQLKCTVCNYEFRRAGCLTRHMLKHARDTPPPLKCNICDYECGTRQYLKQHVLIHTDEKPFCCDLCDYKCRVAQNLKSHMLTHTGEKPFVCDLCDYKFKRPVSLRRHRLKHADGKHFTCTFCDQSFPSADRLKLHATTHTGENRFHCALCDFKCRFKVTMKQHMFTHTGDRPFNCELCDYKCLQAGSLKQHMLTHTHEKPFACDLCDYKCRVKESLRLHKLKHTGDKPFRCAICDFKCIYRKNLEVHILTHSDDRPFSCDLCDYKCVQAGSLKRHKLRHTGEKPFACDLCDYKCRHKDSLKLHMVKHAGGKPFRCKICNSEYLHEKSLRKHFLIHTGEKPFGCDLCDYKCRQAGKLKLHMLKHTGEKPFACDLCDYRCREKEYLKVHKVKHSGDKPFCCEICDGKFVSRHSLRQHALIHTGEKPFSCDLCDYKSVKAGNLKQHSIVHTSEKPFACDLCDYKSRKNVSLKKHKLTHQRGAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -