Pinq024461.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49730536-49738713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 42 0.0029 0.18 13.3 1.8 1 23 58 80 58 80 0.98 2 42 0.00013 0.0082 17.5 1.3 1 23 86 108 86 108 0.97 3 42 0.0018 0.11 13.9 4.0 1 23 114 136 114 136 0.97 4 42 0.075 4.7 8.8 0.6 1 23 142 164 142 164 0.97 5 42 2.6 1.6e+02 4.0 5.2 2 23 171 193 170 193 0.88 6 42 2.4 1.5e+02 4.1 0.4 1 14 199 212 199 216 0.86 7 42 0.00047 0.029 15.8 1.2 1 23 238 260 238 260 0.98 8 42 0.0022 0.14 13.6 1.7 3 23 268 288 266 288 0.98 9 42 0.0021 0.13 13.7 4.6 1 23 294 316 294 316 0.97 10 42 0.049 3.1 9.4 0.6 1 23 322 344 322 344 0.97 11 42 5.9e-05 0.0037 18.6 0.6 1 23 379 401 379 401 0.98 12 42 3.3 2.1e+02 3.6 1.6 1 20 407 426 407 428 0.93 13 42 0.0099 0.62 11.6 1.4 2 23 445 466 444 466 0.93 14 42 0.00081 0.051 15.0 1.9 2 23 473 494 472 494 0.97 15 42 0.047 3 9.4 1.4 1 23 500 523 500 523 0.95 16 42 0.00032 0.02 16.3 0.6 1 23 532 554 532 554 0.97 17 42 0.0026 0.16 13.4 3.3 1 23 560 582 560 582 0.99 18 42 0.0014 0.087 14.3 2.7 1 23 588 610 588 610 0.96 19 42 0.00093 0.058 14.8 4.4 1 23 616 638 616 638 0.97 20 42 0.0076 0.48 11.9 2.6 3 23 646 666 644 666 0.97 21 42 0.65 41 5.9 6.4 1 23 672 694 672 694 0.96 22 42 0.14 9 7.9 2.3 1 23 700 722 700 722 0.97 23 42 0.04 2.5 9.7 2.6 1 23 728 750 728 750 0.96 24 42 0.61 38 6.0 1.1 3 23 768 788 766 788 0.96 25 42 0.0069 0.43 12.1 3.5 3 23 796 816 794 816 0.98 26 42 0.00021 0.013 16.9 3.3 1 23 822 844 822 844 0.97 27 42 0.14 8.7 8.0 3.3 1 23 850 872 850 872 0.97 28 42 1.9 1.2e+02 4.4 0.4 1 17 878 894 878 894 0.90 29 42 0.00017 0.011 17.1 1.4 1 23 910 932 910 932 0.98 30 42 0.018 1.1 10.8 1.4 2 23 939 960 938 960 0.95 31 42 0.093 5.8 8.5 3.7 2 23 967 988 966 988 0.96 32 42 0.00068 0.042 15.3 3.6 1 23 994 1017 994 1017 0.95 33 42 1.2e-05 0.00075 20.8 0.3 1 23 1024 1046 1024 1046 0.97 34 42 0.0043 0.27 12.7 2.6 1 23 1052 1074 1052 1074 0.98 35 42 0.0016 0.098 14.1 2.1 1 23 1080 1103 1080 1103 0.95 36 42 0.23 14 7.3 2.1 1 23 1109 1131 1109 1131 0.96 37 42 0.042 2.6 9.6 5.1 1 23 1137 1159 1137 1159 0.96 38 42 0.3 19 6.9 3.7 1 23 1165 1187 1165 1187 0.97 39 42 0.097 6.1 8.5 3.1 1 23 1193 1215 1193 1215 0.97 40 42 0.019 1.2 10.7 2.2 1 23 1221 1243 1221 1243 0.97 41 42 0.034 2.1 9.9 1.5 3 23 1251 1271 1249 1271 0.97 42 42 3.6 2.2e+02 3.5 3.6 1 23 1277 1299 1277 1300 0.94
Sequence Information
- Coding Sequence
- ATGACTCCCGGCATAAATTCCCCTCCAACTTTTTTTGTCATCGCCCCTTATAACTGTCAATCTTGTTTCAGATGTCAACAGATTTCTTCGAAACCTAAAACCGCGAAGAAAACTTCCGACCGTCGGGCACGCCGCTCCAAAATTCAAACCAAAAGACAAATCGAGAAACGGTTTCGTTGCACGGTTTGCGATTACCGGTGCGGACAacccataaaattaaaaaggcaCGTGCTatcgcacaccggcgagaaaccgttcgcttGTGACATTTGCGATTACAGATGCATACGAGCTGAATCCTTAAAGCGACATACGTTAACCCACACGGGCGAGAAGCCTTTcgcttgtgatctttgcgatcaTAGATGTCGACAGGCCATAAACTTGAAGCGACATAGACTAACGCACACCGGTGACAAACCGTTCGCCTGCGATCTTTGCGACTACAAATCTGCAGAGAGGAGAGGTTTGAATCGGCACAAGTTAAAACACACCGGCGACGCACCGCTTCGCTGCAACATTTGCGATTTCGAGTGCTTTCACAAGATTACCTTGAAGCACCACGTCGTGTTACGACATGCCGGCGGAAAACTATTCAGTTGTGACATATGTCAACGGATTTATTCCAAACCTAAAACCGCGAAGAAGAAAACTTCCGAGCGTCGGACACGCCGTTCTAAATTTCAAACCAGAAGGCAAATCGAGAAACCGTTTCGCTGCACGGTTTGCGATTACAGGTGCGGACAACCCATAGAACTAAAAAGGCACGTGCTAACTCACACCGGCGaaaaaccgttcggttgtgacctttgcgattacagaTGCATACGAGCTGAATCCTTAAAGCGACATACCTTAACCCACACGGGCGAGAAGCCCTTcgcttgtgatctttgcgatcaTAGATGTCGACAGGCCATGAACTTGAAGCGTCATAGgctaacgcacaccggcgagaagccgttcgcctGCGATCTCTGCGACTACAAATCCGCAGAGAGTAGAGGTTTGAAGCGGCACAAGTTAAAACACACCGGCGACGCACCGTTTCGCTGTAAGATTTGCGATTTCGAGTGCCTGCACAAGAACACCTTGAAGCACCACGTCGTGGAGAGACATACCGGCGGAAAACTATTCAGTTGTGAcatttgcgattacaaatacgAACTGCCCAACTCCTTGAAACGACACATGTTAACACATACCAGCGAGAAGCTTTTCGCTTGTGATGTTTGCCTCTACAAGAGTCACCATTCTGGAAACTTGAGCAGGCACAAGACTCAAGGATATTTAAACAGGCACGTAATGGCCCACGCTGACAAGGGGCTGTTGCGGTGCGTTGCATGCAATTGCGAGTTTCGGCGGGCCGAACTTCTGCAGCGGCACATGTTCGAACATGCCCAGGAAACTCTGCTCAGCTGTAACCTGTGCGATTACAAATCGAAGACCTTCATAAATTTGAAGCGGCACATGTCAACACACACCGAGGAGAGGCAGTTCTCCTGCGATTTCTGCgataacaaatacaaagaaCTTCGCACCTTAAAGCGGCACGTCATCGTGAAGCACACGGACGGAAACCACGAGAAACAGTTCAGATGCTCCCTCTGCGATCGCCAATTCGGCTCTGCCTTCAGCTTGAAACGTCACGTGATGGCGCACAAGGGCGAAAGGCCTTTTCGCTGCACGATTTGCAATTTCAAGTTCCTACACGCGCAAACCTTGGAGCGGCACATgttaacgcacaccggcgagaaaccgttcgcttGTGACatctgcgattacaagtgcgtACAACTCGGACATCTAAAACGGCACAAgctgatacacaccggcgagagacCTTTCGCTTGCgaactttgcgattacaaatgccggcaCAGAGACTCTTTGAGGGTGCACATGTTAAAACACACCGGCGATAAACCGTTCGGTTGTAGGATTTGCGACGTCAAATTCCGAGACAAGTGCAGCTTCAAACGGCACGTGTTGATACACGCCGGCCAGAAACCGTTCTGCTGTAGGATTTGCGATGTGAAATGCCAAGACAAGACCAGCTTCAAACGGCACACGTTGATACACGCCGGCCAGAAACCGTTCAGctgcgacctttgcgattaccAGTGCAGAGGACCCGAACGCTTGAGACAGCACAAGTTAAGACACACGGGCGAGAAGCCTTTCGCCTGCGATCTCTGCGACTACAAATGCCGAGAAAGAAAATCTTTGAAAGTGCACGAGTTAAAACACACCGGTGTGGAACCCACCAGTGACGTATACACAGGCGATAAGCCGGTTTGCTGCAAGATTTGCGACGTCAAATTGCGAAACGAGAAAATCCTGGTGCGGCATCTTTTAACGCACAgtggcgagaagccgttcggctgTACACTTTGCGATTACAGGTGCCGACGGGCCGCGCatttgaaacaacacgctttaacACATACTGACGAGAAGCCTTTCGCATGCGATCAGTGTGACTACAAGTGCCGCAGGCAAGATTCTTTAAAACTACACATGTTAAAACACACCGGTGATAAACCGTACTGTTGCGACATCTGCGGTTTTAACTGTCAACGCCAGAACGTcttgaaacagcacgtgctagtacactccggcgagaaaccgttcgcttgtgatctttgcgattacaggtGCAGGCGAGCCGAAGGTTTGAGATGCCAACGGACTTCCAAATCTGGAActgcaaaagaagaaaaaccgtTCGAATGTCGTATATGCGGCTCTAAATTTAGAACTCAAAGATATTTAGACAGGCACGTGATGACACACGCCGACGCGCAGCTGTTGAGATGCGTCATCTGCAATTGCGAGTTTCGCGGAGCCGAATTCCTGCGGCGGCACATGTTCGAGCACACCCAGGAAACTCCGCTCAGCTGTAACCTGTGCGACTTCAAATGCAAATCGTTCGTAACTTTGAAACGGCACGCGtcgacgcacaccgacgagaggCGCTTCTCCTGCGATCTCTGCAATACAAAATTCAAGCAGCTCCACAATCTCAAGCAGCACGTCATGTTGAAGCACACCGGCGAAAAGCTACAGTTCAGATGCGACATTTGCGATCGCAAATTCTCCGCCGCCTCCAGTTTGAAGCGTCACGTGATGGCGCACAAAGGCGAGAGGCCTTTCCGCTGCACGATCTGCGATTTCAAGTTCCTGCACGCGCAGACCTTGGAGCGGCACTTgttgacgcacaccggcgagaaaccgttcgcgTGTGACatctgcgattacaagtgcggACAACCCGGACATTTAAAACGCCACAAACTGGTGAatcacaccgacgagaagcctttcgcctgcgatctctgcgattacagGTGCCGCGACGGGGTTTCTTTGAAGTTGCACACGTTCAAACACACCGACGAGCATCCGTTTTGTTGCAAGATTTGCAACGTCAAGTGTCGAGACAGGCCGAGCTTGAAGCGGCACGTGTTCATACACACCGGCctgaaaccgttcagttgtgacctttgcgattacaagtgcatGCGACCGATGCGCTTAAGGCAGCACAAGCTGAGACATACGGACGAGAAGCCTTTcgcttgcgatctttgcgattaccgGTGCCGGGAAAGGCAATCTTTGCAAATGCATAAGTTGAAGCACACCGGGGAGAAGCAGTTTTGCTGTGAGATTTGCAATGTCAGATTCATGTTCAAGAAGGTCCTGGTGCGGCACATGTCAATACACAGCGGCGAGAAACCGTATGGTTGCGATCTATGCGATTACAAGTGCGGAAGGCTCGAATATTTGAAAAAGCATGTGCTaaggcacaccgacgagaagcctttCGCTTGCGAAGTTTGCGAGTATAAATGCAAGGCGGCGATATTCTTGAAACAACACAAATTGAAACATCATCGAGAAGCTGTTTAA
- Protein Sequence
- MTPGINSPPTFFVIAPYNCQSCFRCQQISSKPKTAKKTSDRRARRSKIQTKRQIEKRFRCTVCDYRCGQPIKLKRHVLSHTGEKPFACDICDYRCIRAESLKRHTLTHTGEKPFACDLCDHRCRQAINLKRHRLTHTGDKPFACDLCDYKSAERRGLNRHKLKHTGDAPLRCNICDFECFHKITLKHHVVLRHAGGKLFSCDICQRIYSKPKTAKKKTSERRTRRSKFQTRRQIEKPFRCTVCDYRCGQPIELKRHVLTHTGEKPFGCDLCDYRCIRAESLKRHTLTHTGEKPFACDLCDHRCRQAMNLKRHRLTHTGEKPFACDLCDYKSAESRGLKRHKLKHTGDAPFRCKICDFECLHKNTLKHHVVERHTGGKLFSCDICDYKYELPNSLKRHMLTHTSEKLFACDVCLYKSHHSGNLSRHKTQGYLNRHVMAHADKGLLRCVACNCEFRRAELLQRHMFEHAQETLLSCNLCDYKSKTFINLKRHMSTHTEERQFSCDFCDNKYKELRTLKRHVIVKHTDGNHEKQFRCSLCDRQFGSAFSLKRHVMAHKGERPFRCTICNFKFLHAQTLERHMLTHTGEKPFACDICDYKCVQLGHLKRHKLIHTGERPFACELCDYKCRHRDSLRVHMLKHTGDKPFGCRICDVKFRDKCSFKRHVLIHAGQKPFCCRICDVKCQDKTSFKRHTLIHAGQKPFSCDLCDYQCRGPERLRQHKLRHTGEKPFACDLCDYKCRERKSLKVHELKHTGVEPTSDVYTGDKPVCCKICDVKLRNEKILVRHLLTHSGEKPFGCTLCDYRCRRAAHLKQHALTHTDEKPFACDQCDYKCRRQDSLKLHMLKHTGDKPYCCDICGFNCQRQNVLKQHVLVHSGEKPFACDLCDYRCRRAEGLRCQRTSKSGTAKEEKPFECRICGSKFRTQRYLDRHVMTHADAQLLRCVICNCEFRGAEFLRRHMFEHTQETPLSCNLCDFKCKSFVTLKRHASTHTDERRFSCDLCNTKFKQLHNLKQHVMLKHTGEKLQFRCDICDRKFSAASSLKRHVMAHKGERPFRCTICDFKFLHAQTLERHLLTHTGEKPFACDICDYKCGQPGHLKRHKLVNHTDEKPFACDLCDYRCRDGVSLKLHTFKHTDEHPFCCKICNVKCRDRPSLKRHVFIHTGLKPFSCDLCDYKCMRPMRLRQHKLRHTDEKPFACDLCDYRCRERQSLQMHKLKHTGEKQFCCEICNVRFMFKKVLVRHMSIHSGEKPYGCDLCDYKCGRLEYLKKHVLRHTDEKPFACEVCEYKCKAAIFLKQHKLKHHREAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -