Pinq024583.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:51076842-51081799[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0019 0.12 13.8 1.3 1 23 10 32 10 32 0.98 2 23 5.1e-05 0.0032 18.8 3.1 1 23 38 60 38 60 0.98 3 23 0.0038 0.24 12.9 1.9 1 23 66 88 66 88 0.97 4 23 0.0017 0.1 14.0 0.7 1 23 94 116 94 116 0.98 5 23 0.034 2.1 9.9 1.9 2 23 123 144 122 144 0.96 6 23 0.012 0.77 11.3 4.7 1 23 150 173 150 173 0.95 7 23 0.0036 0.22 13.0 0.2 1 23 207 229 207 229 0.96 8 23 0.00021 0.013 16.9 1.4 1 23 235 257 235 257 0.98 9 23 0.31 19 6.9 8.3 1 23 263 285 263 285 0.98 10 23 0.15 9.5 7.8 0.8 2 23 294 315 293 315 0.95 11 23 0.068 4.3 8.9 1.0 3 23 323 343 321 343 0.97 12 23 0.00039 0.024 16.0 3.0 3 23 351 371 351 371 0.99 13 23 0.00015 0.0096 17.3 2.8 1 23 377 399 377 399 0.98 14 23 0.26 16 7.1 4.5 1 23 405 427 405 427 0.98 15 23 0.0079 0.5 11.9 1.8 2 23 434 455 433 455 0.96 16 23 0.00074 0.046 15.1 0.1 1 21 533 553 533 554 0.95 17 23 4.9e-06 0.00031 22.0 0.9 2 23 564 585 564 585 0.97 18 23 8e-05 0.005 18.2 0.1 1 23 591 614 591 614 0.96 19 23 0.0055 0.34 12.4 0.1 1 23 625 648 625 648 0.97 20 23 0.003 0.19 13.2 0.6 1 23 654 676 654 676 0.95 21 23 6e-06 0.00037 21.7 0.5 1 23 682 704 682 704 0.98 22 23 0.00011 0.0071 17.7 2.9 1 23 710 732 710 732 0.97 23 23 5.9e-05 0.0037 18.6 2.4 1 23 738 760 738 760 0.99
Sequence Information
- Coding Sequence
- ATGTCcaaacacaccgacgagaagccgttcaagtGCAAGCTCTGCGATTTCCGAACCAAACAGTCCGTCTGGCTGAAAGAGCACGAGCTGACCCACATCTGCGCCAAACCATTCAAATGCATGATCTGCAATTACCGGTGCAACCAAGCCAGGAACTTGAAGAGGCACATGAtcatacacaccgacgagaagccgttcaagtGCAGCCTCTGCGATTACAGCTGCAACTACCTAGCGAGCTTGAAATCGCACGAGGCGATGCACACCGGCGACATGCCGTTCAAATGTACGATTTGCGATTATGAGTGCGACCTGGCGGGAAGATTGAAACGGCACATGGCGGTGCACGATAGCAAAAGGCGACTTAAATGCGACGCCTGCGAGTACAGGTGCAATTCCTCCGGGACTTTGAAGAGGCACGCGCTGAAACACACCAGAGAGAAGACGTTCGAGTGTACGGTTTGCAACTACAAGTGCAAAATGGCCGGCCATTTAAAATCGCATATTATGTTCTTTCATGGCAtcgagaaATGCCAGTTTCTGATTCTCGGAAATAAATCAACACATGAGAATTTATTACGCAAGTCGCATCCCTCGAGCCGTACCGGCGAAAAGCTGTTCAGATGCGTCGTTTGCGGTTACGTAATTCGAGGGCATTCCGAGTTGAAGCGCCACGAGGCGATTCACATCGACAGGAAGGCCTTCAGCTGTAAATTCTGCGGCAAGAAATTCCGGCCGGACGAGAACGTGAAGCAGCACTTgctgacgcacaccggcgaaaacCCGCACAGCTGTCACCTCTGCGAGTTTGAGTGTCGGCAAATCGCGAGATTCAAGCGTCACATGAGAACGCACACttccaataagaaaaaattggtGAGCTGCAGtttttgcgattacaagtgcgtCCAAGCCGCGTATATGACGCAGCACGAGATGGAACACACCGAGGcgaagccgttcggttgcggcgtttgcgattacaagtgtaaATGGCTCTGGAATTTGAAAGATCATATGCTGACGCACACGGATGTGAAACCGTTgggttgcgatctttgcgattacaaatgcaaGCGTGCGACTAACTTAAAGGATCACATGCTAACACATACCGATAAgaaaccgttcagctgtgaGGTTTGCCCTTACAAGTGTAAACGACTGACGACTTTGGAGCAGCATATGCAAACGCACGCCGAcaagaaaccgttcagttgcggCTTTTGCAGTTACAAGTTCACTTGGAGTAAGCATTACAAAGAGCACTTgttaacacacaccggcgagaaaccgttgaGATGCGGACTTTGCGACTACAAATGCCGACAGTTGCTGAGCTTGAAGCAGCACATGATGGCACATTTAGAGAGcggaaaATTAAAATTGCCCGCCGGAATCAAAATAAAACGAGTCACCAATCAGCAATCGAAACCAAGCGCGCCCTGCCCCAACCCCAGCTTGCCCAAGCCAACGCCACCGATCCCCGGTGTGCGAATTCGGAAAATCGGCGGACGCGTTCGGAAAACCATCGCGAAAGAAAAACCCCAGATCCGGAGAAAATCAGCGAATGTCATCGAGGTCACCCGCACCAACTACATCTGCGTCATGTGCGGCCTTTCCTTCCAGAACTTCGACGCCCTTAACGCGCACATGAAGAGCGAGACGCCTTGTAAAATCGTGGTCCCGAGGTGCCCCGTCTGCGAAAAGACCTTCAAAACTAGGAGCAGGTTGACCTCGCACATGGCGGTGCACAAGGAGAAGCCGAAGTTTCCGTGCAGGAAATGCGGAAGGTCTTTCGCCAACACCGTCGCGCTTCAAGCCCACGCCCTCACCCTCCACACCGCCTACTTCGACGCCACCCTCGAGGACTTCGCGTGCAAGCTCTGCGGCGAGAGGGCCCCCACGAAATCCGCGGTCTTGCAGCACATCAACACCAAGCACATGCACGTGACCACGTTCTTATGCGACGTGTGCGGCAAGTGCTTCTTGCAGGAGAACGGCTTGAAGGCGCACGCGCTGACGCACAGCGATTCCAAGCCCTTCGTGTGCCAAGTTTGTTCCAAGCCTTTCAAGATGTCCACCGCGCTCAAGGCTCACTTAAGGACGCACTCGCAGGAGAAGAGCTTCGTGTGCGACGAGTGCGGCAAGGCTTTCAAGAAGAAGTGCAGCCTCGTCGAGCACAAGAAGTACCACGCCGGGGAATTCCAGTTCAAGTGCAACGTCTGCTCCAAGCAGTTCGTCTCCAAGTCCGTCTATAATTCGCACATGAAGTCGCATTTAGTCGATAGTTTTTCTTAA
- Protein Sequence
- MSKHTDEKPFKCKLCDFRTKQSVWLKEHELTHICAKPFKCMICNYRCNQARNLKRHMIIHTDEKPFKCSLCDYSCNYLASLKSHEAMHTGDMPFKCTICDYECDLAGRLKRHMAVHDSKRRLKCDACEYRCNSSGTLKRHALKHTREKTFECTVCNYKCKMAGHLKSHIMFFHGIEKCQFLILGNKSTHENLLRKSHPSSRTGEKLFRCVVCGYVIRGHSELKRHEAIHIDRKAFSCKFCGKKFRPDENVKQHLLTHTGENPHSCHLCEFECRQIARFKRHMRTHTSNKKKLVSCSFCDYKCVQAAYMTQHEMEHTEAKPFGCGVCDYKCKWLWNLKDHMLTHTDVKPLGCDLCDYKCKRATNLKDHMLTHTDKKPFSCEVCPYKCKRLTTLEQHMQTHADKKPFSCGFCSYKFTWSKHYKEHLLTHTGEKPLRCGLCDYKCRQLLSLKQHMMAHLESGKLKLPAGIKIKRVTNQQSKPSAPCPNPSLPKPTPPIPGVRIRKIGGRVRKTIAKEKPQIRRKSANVIEVTRTNYICVMCGLSFQNFDALNAHMKSETPCKIVVPRCPVCEKTFKTRSRLTSHMAVHKEKPKFPCRKCGRSFANTVALQAHALTLHTAYFDATLEDFACKLCGERAPTKSAVLQHINTKHMHVTTFLCDVCGKCFLQENGLKAHALTHSDSKPFVCQVCSKPFKMSTALKAHLRTHSQEKSFVCDECGKAFKKKCSLVEHKKYHAGEFQFKCNVCSKQFVSKSVYNSHMKSHLVDSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -