Pinq024260.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47378453-47389421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 5.8 3.6e+02 2.9 0.6 15 23 2 10 1 10 0.91 2 34 0.0051 0.32 12.5 2.9 1 23 16 38 16 38 0.98 3 34 0.014 0.9 11.1 4.2 1 21 44 64 44 65 0.94 4 34 0.012 0.72 11.4 3.2 1 23 89 111 89 111 0.98 5 34 0.0011 0.072 14.5 1.1 1 23 117 139 117 139 0.98 6 34 0.011 0.66 11.5 2.4 2 23 174 195 173 195 0.97 7 34 0.0011 0.071 14.5 1.1 3 23 203 223 201 223 0.98 8 34 0.0048 0.3 12.6 3.4 1 23 229 251 229 251 0.98 9 34 0.054 3.4 9.3 5.0 1 23 257 279 257 279 0.97 10 34 0.029 1.8 10.1 0.4 3 23 287 307 285 307 0.97 11 34 0.011 0.66 11.5 2.4 2 23 345 366 344 366 0.97 12 34 0.00012 0.0073 17.6 0.9 1 23 372 395 372 395 0.98 13 34 0.032 2 10.0 3.8 1 23 401 423 401 423 0.98 14 34 1 63 5.3 4.5 1 20 429 448 429 450 0.94 15 34 0.00089 0.056 14.9 4.1 1 23 478 500 478 500 0.98 16 34 0.00025 0.016 16.6 0.6 1 23 517 539 517 539 0.98 17 34 0.79 49 5.6 3.3 1 23 545 567 545 567 0.97 18 34 0.00018 0.011 17.1 1.5 1 23 573 595 573 595 0.99 19 34 1.2e-05 0.00074 20.8 1.7 1 23 601 623 601 623 0.99 20 34 0.0045 0.28 12.7 3.1 1 23 629 651 629 651 0.98 21 34 0.00013 0.0081 17.5 1.7 1 23 657 679 657 679 0.98 22 34 0.0011 0.071 14.5 5.6 1 23 685 707 685 707 0.98 23 34 0.39 25 6.5 0.1 7 23 711 727 711 727 0.95 24 34 0.037 2.3 9.8 5.0 1 23 733 755 733 755 0.97 25 34 0.0053 0.33 12.4 5.4 1 23 761 783 761 783 0.97 26 34 0.00062 0.039 15.4 2.7 1 23 789 811 789 811 0.97 27 34 0.002 0.13 13.7 2.0 1 23 817 839 817 839 0.98 28 34 0.13 7.9 8.1 5.9 1 23 845 867 845 867 0.98 29 34 0.02 1.2 10.6 1.3 2 23 874 895 873 895 0.96 30 34 0.00014 0.0085 17.4 4.8 1 23 901 923 901 923 0.98 31 34 0.00019 0.012 17.0 2.2 1 23 929 951 929 951 0.98 32 34 0.014 0.89 11.1 5.9 3 23 959 979 957 979 0.98 33 34 0.0029 0.18 13.2 2.2 1 23 985 1007 985 1007 0.98 34 34 0.00025 0.016 16.6 3.9 1 23 1013 1035 1013 1035 0.97
Sequence Information
- Coding Sequence
- ATGGACTTGAGTAAGCACATGCGAACACACAGCGGTGAGAAGCCGTACAGTTgtaatctttgcgattataaatgcaaaGAGATCGGACAGTTGAACAAGCACAGGCTCACGCACACCAGCGAGAGgccgttcagctgtgatcttTGTGATTATAAATGCAAACGATGGGAATCTCTAAAAATACACAGATGCCAAGAGATTTTCAAGCCTGAAACTGTAaccaagaaaattgaaaaacgcaacACTAAATCCGGCGAAAAGCCGTTCAGATGTGATATTTGTGATCTCGATTGTCAATACCTCGGACATTTGAAAACGCACTTATTAACCcacaccgatgagaagccgttcagttgtaacACTTGCGGCTACAAAGCGCGACGGCGCGGGCGTTTGGACGAACATATGCGGACACACACCGGTCAGAAGCTgttcagttgcgatctttgcgattacaaatgccaaTGGTTCGGCTCGTTAAAAGCACACAAGTCAAAACACGCCGACGAGAAGACGATCAGCTGcgatctgtgcgattataaatgtaaaCAGGTCGCATACTTGAGGAAgcacaagttaacgcacacGGGCGAGAAGCCTTTCGGTTGTAACATCTGCGATTACAAAGCCCGACAGAGTACGGATTTGAGTAGGCACAAGCGAACACACACCGGAGAGAAGCCGTACAGTTGCGatatttgcgattataaatgcaaaGAGAACGGACGCTTGAGAAGGCACAAGTTAACACACGCGAGCGAAAAGCCGTTTAATTGTGatttttgcgattataaatgtaaCCAGTTCGAATATTTGAAGAGGCATAAGTTAGttcacaccggcgagaagcctttCGGTTGTAACGTTTGCGATTACAAAACCGGACGGAGAGGACGTCTGACTGATCATATGAAAGCACATGCCGGCGATGCTTGTGAAAAGCCGTTTAAATGCGAAAGTTGCGATTATCAATGCCAGTGGTTGGGATCTTTAAAAATACACAAGTTAAGACACACCGAGGAGAAGTCGAttagttgtgatctctgcgattataaatgtaaaCAGGTCGCGTATTTGAGAAAGCAcaagttaacacacaccgacgaaaagCGTTTCAGTTGTGCTATTTGCGATTACAAAACCCGACAGGGTACAGACTTGAATAGGCACATGCGAACAACACACACCGCCGAGAAGCCGTATaattgtgatctttgcgattataagtgcaaACAGATTGGACGTTTGAAAAGGCACAAGTTAACACACACCAGCGGAAGACCGTTCAGCTGTGAACATTGCGGTTATAAATGCGGAGCATTTGCAAATTTAGAGAGGCACAAGTGCCAACGGATTTTGAAGTCTGAAACTGTTAACAAGAAAAGTCACAAGAGCAGCGCTAGGTCTTCTGGATACAAGCGGGAAAAGCCATACAGGTGTACCATCTGCGATCGCAGTTGCCATTACATTGGAACCTTGAAAAGGCACATGTTAATCCACACcgGACATCTGAAATCGCACCAGCTAAcccacaccggcgagaagccgtacaGTTGTAATATCTGCGGCTACAAAGCCCGACAGATTGGACATTTGAACGATCATTTGCGAATTCACACCGGCGAGAATCCGTTCACTTGCGACctgtgcgattacaaatgcctgCGGCGGGGAAGTATGAAAATTCACAAGTTAACGCACAGCGGAAATAAGCCGTACAGTTGCGACATCTGCGGGTACCAGTGCGTAGAGGGTTCGTATTTAAAAACGCATATGCGAACGCACACCGGTGAGAAGCCGTTCACTTGTAACATCTGCGGCTATAAGGCCCGACAAAGCGGACATTTGAGTGAACACATGcgaacgcacaccgacgagaagccgttcagttgtgatctctgcgattataaatgtcaatacttgGCAAATTTAAAAACGCACCAGTTAACTCACACCGGTGAGAAGCCGTTTAGTTGCAACCTTTGCGACTACAAGGCCCGACAGAACGTGCACCTGATTGAGCACATGCGAACCCACAGCGCGGAGAAGCCATTCAGTTGTGATCTATgtgattacaaatgccgacgaAGCACGAGCTTGAAAAGGCACAGATTAAGACACAACAGCGGCGataagccatGCCGACAGAGCTGCAGTTTGAAGAACCACATATTAACACACACCGGTGAAAAGCCTTTCAGCTGCAACACTTGCGATTACAGATGTAAGGAAATCGGACATTTAAGAAGGCACAAGTTAATCCACACCGGTGAGAAGcctttcagttgtgatctttgtgaTTACAAATGCCGGCAGAGCTGCAGCCTTAAGAACCACATGCTAGCACACACCGGCCAGAATCCTTTCGCATGCGatatttgcgattataaatgcaagGATGCCGGGAAATTAAAAAGGCACAGGTTTACACACACCAGCGAGAAGCCCTTCAGTTGTAACATTTGCGGTTATAGATGCAAAGAGATGGGAAATATGAAAAGGCACGCGTTAACCCACACCGGCGataagccgttcagttgcgatctcTGCGACTACAAATGCACACTCTTCGGACATTTGAAAAACCACAAGTTAACACACACCGGTGAGACTCCTCTCAGCTGCAATGcatgcgattataaatgcaaaGAGATCGGAAGTTTGAAGAGGCACATTTTAACGCACACCGGCAAGAAGCCTTTCAGTTGcaacctttgcgattacaagtgccggcAGAGCTCCAGCTTAAAGTATCACATgttaacgcacaccggcgagaagcctttCAGTTGTAatgtttgcgattataagtgcacAGTGGTTGGAAATTTGAAGAGGCACATGTTgaggcacaccggcgagaagcccttCGGTTGTAATCTTTGCGACTACAGGTGCACGCAGTTCGGACATTTGAAGAAGCACAGGCTAACGCATACCGGCgaaaagccgttcagttgtgatctttgcgagtATAAGTGCCGTCTAGTCGGAAATTTGACGAAACACATGTTGACCCATACTGTCGAGAAGCCCTTTTTTTGTGGTCACTGCCAGCGAAAATTCAGGCAAATTTCGCGTTTGGAACGGCACATGCGAGGTCATGTCGTCGAGaagttgtaa
- Protein Sequence
- MDLSKHMRTHSGEKPYSCNLCDYKCKEIGQLNKHRLTHTSERPFSCDLCDYKCKRWESLKIHRCQEIFKPETVTKKIEKRNTKSGEKPFRCDICDLDCQYLGHLKTHLLTHTDEKPFSCNTCGYKARRRGRLDEHMRTHTGQKLFSCDLCDYKCQWFGSLKAHKSKHADEKTISCDLCDYKCKQVAYLRKHKLTHTGEKPFGCNICDYKARQSTDLSRHKRTHTGEKPYSCDICDYKCKENGRLRRHKLTHASEKPFNCDFCDYKCNQFEYLKRHKLVHTGEKPFGCNVCDYKTGRRGRLTDHMKAHAGDACEKPFKCESCDYQCQWLGSLKIHKLRHTEEKSISCDLCDYKCKQVAYLRKHKLTHTDEKRFSCAICDYKTRQGTDLNRHMRTTHTAEKPYNCDLCDYKCKQIGRLKRHKLTHTSGRPFSCEHCGYKCGAFANLERHKCQRILKSETVNKKSHKSSARSSGYKREKPYRCTICDRSCHYIGTLKRHMLIHTGHLKSHQLTHTGEKPYSCNICGYKARQIGHLNDHLRIHTGENPFTCDLCDYKCLRRGSMKIHKLTHSGNKPYSCDICGYQCVEGSYLKTHMRTHTGEKPFTCNICGYKARQSGHLSEHMRTHTDEKPFSCDLCDYKCQYLANLKTHQLTHTGEKPFSCNLCDYKARQNVHLIEHMRTHSAEKPFSCDLCDYKCRRSTSLKRHRLRHNSGDKPCRQSCSLKNHILTHTGEKPFSCNTCDYRCKEIGHLRRHKLIHTGEKPFSCDLCDYKCRQSCSLKNHMLAHTGQNPFACDICDYKCKDAGKLKRHRFTHTSEKPFSCNICGYRCKEMGNMKRHALTHTGDKPFSCDLCDYKCTLFGHLKNHKLTHTGETPLSCNACDYKCKEIGSLKRHILTHTGKKPFSCNLCDYKCRQSSSLKYHMLTHTGEKPFSCNVCDYKCTVVGNLKRHMLRHTGEKPFGCNLCDYRCTQFGHLKKHRLTHTGEKPFSCDLCEYKCRLVGNLTKHMLTHTVEKPFFCGHCQRKFRQISRLERHMRGHVVEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -