Pinq024459.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49710080-49718921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 41 0.023 1.4 10.4 3.6 1 23 10 32 10 32 0.97 2 41 0.09 5.6 8.6 0.2 1 23 38 60 38 60 0.96 3 41 0.0072 0.45 12.0 4.4 1 23 66 88 66 88 0.97 4 41 0.66 41 5.8 3.1 3 23 96 116 94 116 0.97 5 41 6.3 3.9e+02 2.8 1.9 2 23 151 172 150 172 0.94 6 41 0.066 4.1 9.0 1.9 3 23 180 200 178 200 0.97 7 41 0.035 2.2 9.8 1.0 3 23 208 228 206 228 0.98 8 41 0.015 0.91 11.0 3.5 1 23 234 256 234 256 0.97 9 41 0.1 6.4 8.4 3.3 2 23 263 284 262 284 0.96 10 41 0.0075 0.47 12.0 1.8 1 23 301 323 301 323 0.98 11 41 0.00011 0.007 17.7 1.3 1 23 329 351 329 351 0.98 12 41 0.36 22 6.7 1.0 1 23 357 379 357 379 0.97 13 41 0.0017 0.11 14.0 1.6 1 23 385 407 385 407 0.98 14 41 3.4e-05 0.0021 19.3 2.2 3 23 415 435 413 435 0.98 15 41 4.7e-05 0.0029 18.9 3.8 3 23 443 463 441 463 0.98 16 41 0.012 0.74 11.3 1.5 1 23 469 491 469 491 0.96 17 41 0.011 0.66 11.5 2.7 2 23 498 519 497 519 0.96 18 41 0.0054 0.34 12.4 1.5 1 23 525 547 525 547 0.98 19 41 0.0025 0.16 13.5 4.7 2 23 555 576 554 576 0.96 20 41 0.021 1.3 10.6 0.8 1 23 582 604 582 604 0.98 21 41 6.2e-05 0.0039 18.5 1.8 1 23 610 632 610 632 0.97 22 41 0.0024 0.15 13.5 3.8 1 23 638 660 638 660 0.98 23 41 0.045 2.8 9.5 3.3 1 23 676 698 676 698 0.98 24 41 0.15 9.2 7.9 6.2 3 23 706 726 704 726 0.97 25 41 0.0029 0.18 13.3 1.1 1 23 732 754 732 754 0.97 26 41 0.0023 0.14 13.6 4.2 3 23 762 782 760 782 0.97 27 41 0.013 0.78 11.3 2.7 1 23 788 810 788 810 0.98 28 41 0.099 6.2 8.4 2.0 3 23 818 838 816 838 0.98 29 41 3.4 2.1e+02 3.6 2.0 2 23 845 866 844 866 0.87 30 41 0.04 2.5 9.7 2.0 1 21 872 892 872 893 0.93 31 41 0.019 1.2 10.7 3.3 2 23 903 924 902 924 0.97 32 41 0.031 1.9 10.0 2.8 3 23 932 952 930 952 0.97 33 41 0.026 1.6 10.3 1.8 1 23 958 980 958 980 0.94 34 41 0.051 3.2 9.3 5.3 1 23 986 1008 986 1008 0.97 35 41 0.073 4.6 8.9 0.8 1 23 1014 1036 1014 1036 0.96 36 41 0.018 1.1 10.8 2.6 3 23 1044 1064 1042 1064 0.97 37 41 3.9e-05 0.0024 19.2 0.1 1 23 1084 1106 1084 1106 0.98 38 41 0.00015 0.0094 17.3 3.8 1 23 1112 1134 1112 1134 0.98 39 41 0.078 4.9 8.8 1.6 2 23 1141 1162 1140 1162 0.95 40 41 0.014 0.88 11.1 8.2 1 23 1168 1190 1168 1190 0.98 41 41 0.0016 0.099 14.1 4.5 1 23 1196 1218 1196 1218 0.95
Sequence Information
- Coding Sequence
- ATGTTAATACACGTGGACGCGAAGCCGTTCGCTTGCGACCTCTGCGATTTCAAAAGCCGACATGCCGCGCATTTGCGACAGCACAAGCTAACGCActccgacgagaagccgttcgcttgcgacctgtgcgattataaaagcCGATTAAACAGGGACTTGAAGATTCACGCGTTAATACAcacgggcgagaagccgttcgcctgcgatctctgcgattataagtgccgaaACGCCGATCATTTGAAGctgcacaagttaaagcacaccgacgagaagccgttcggttgcgatctctgcgattataggTGTCAACAACTCAGACTTTTGAAGCAGCACAAGTTGAGGCACGTTGATGAGATGGCGGCGAGCTGCGggctttgcgattttaaatgccggTTAGGTAGGGACTTAAAATTTCATATGTTGGTACATACGGGAGAAAAGCCGCTCAGTTGTGACCTGTGCGAGTATAAATGCCTGAAAGCCGGGCTTTTGAAGCAGCACAGGTTGAAACACACCGATCAGAAGCCGTACGGCTGTgagctttgcgattataagtgtcgCAAAGTCGGGCTACTAAAACAGCACAGGTTAACTCACACGGGTGAGAAGCCTttcggttgtgatctctgcgattataaaggCCGCAGCGCCGGGCATTTGAAAGAGCACAAGCTAACGCACACCGTcgagaagccgttcgcttgtgatctgtgcgattataagtgccgccGTGTCGGACATCTGAACGAGCACAAGTTAACACACAGCGGCGAGAAACCGCTGAGCTGTGATCTCTGCGACTACAAATGCCGACAGCTGAGATATCTAAATCTGCATAAGCTgagacacaccgacgagaagagGTTTCGATCCCGCAAGGCGAAAATCGCAAGAAAATTCGAATGTCCGATATGCAATGCCAAACACAGACAGCGCGCTGATTTGCACAAACACATGCTCGTACATACGGGTGAAAAGCCGTTCAaatgtgacctttgcgattacgaATGCCGACAGGTCGGGAACTTAAAGAGACACATattgatacacaccggcgagaaggcGTTCAGCTGTGGTCTCTGCGAGTACGAGTGCCGAGAGATTGGGAGACTGAAAGCGCACATGACAAGGCACACGGGCGAGAAGCTGTTCAGCTGTAATTTCTGCGATTATAAAAGCGAGAACCCCGACGATCTGAAGAAGCACAAGCTGAAGCACACCAATGCGAAGCCGTTCggctgtgacctttgcgattataaattccGACACTCCTACGAGTTGGAAAGGCACATGCtaaagcacaccgacgagaagccattcggttgtgatctttgccaTCATAAATTTCGACAGGCGTCGAACCTGAGAGCCCACatgttaacgcacaccgacgagaagccgttcttTTGCGGTCTTTGCGATTTTAGGTGCCGGCAGGTCGGAAACCTGAAGAAGCACGTGGCGATACACACGGACGAATGTCCCTTGAGTTGTAActtttgcgattacaagtgccgacaGGCCGAAAGACTGAAAGCTCACATGTCCCAGCACACAGGCGAGAAGCCTTACAGTTGTGATATCTGCGGTTTTAAAAGCGGACACGCCGGCGATTTGAAAAAGCACAAGTCAAAGCACACCAACGCAAACAAGCCCTTGTgttgtgacctctgcgatttTAAATACCGACACCCCAACGAGTTGCGAAAGCACATGTTAAagcacaccgatgagaagccgtaccgttgcgatctttgcgattttaaatccCGACTGGCCTCAAGCTTGAAAGTCCACAAGGTGACGCACGCGGATGAGAAGCCGTTCTTCTGTGgcgtttgcgattataagtgtcgGCAAGCCGGAAACTTAAAAAAGCACATGTTGATACACACGGACGAATGCCCCTTCACTTGTAAcatttgcgattacaagtgccggcAGGTTGGATGCTTAAAGGAGCACATGCTGATACACacggacgagaagccattACGAATTCCGGAAGCCGAGATAAAAACATTCGAATGCCGACAGTGCCACGCCCAGCTGAAATCGCGCAGAAATCTGCGCGATCATACCCTCAcccacaccgacgagaagccgttcggttgcgatctctgcgattacaaatgccggcaGGTGAAACACCTGAAGCGGCACAAGCTGAAACACGCCGTCGAGAAGCCGTTTTTCTGCgccctttgcgattataagtgccggcAGGTCGGATCCCTGAAAGCCCAcatgttaatacacaccggcgagaagccgtacgGCTGTggcctttgcgattataaatgtcggcaCCCCACCAGCTTAAAAAGGCACATGTTGAGACACGCCAGCGAGGAGTCGTacagttgtgacctttgcgattaccgATGCCGAAACGCCTCGCGTTTAGCGTACCATAAGCTAACGCACGCCGACGGCAAGCCGTTCGGCTGTGACCTTTGCGAGTTTAAGTGTCGCCAGGCCGAGAGCTTGAAGGAGCATAAgctgacgcacaccggcgaCCAGCCGTTGAGCTGTtacctttgcgattacaagacGCTGCACGTTCCGCGTTTGAGACGGCACATCcgaacgcacaccgacgagaaaccgttcagctgtgatctctgcgattataaatgccgggaCGTTGCGTatttgaaacggcacaaGTTGCGAAGGATTCCGAAAGCCGCCGACCTATCCGAATGCCGAATATGTCACGCCAAGCTTAAATCCCGCAAAGACTTGCGCAAACATTATCTCACACATACTGACGAGAAGCCGTACGGTTGTgacgtttgcgattataaatgccgacaatTCGCACAGCTGAAGCAGCACAAGCTGAAACACACCGATGAAAAACCGTTCCTCTGCGGtcactgcgattataaatgccgacggaTCGGTGAATTGAAAGTGCACGCTTTAATACACACaagcgagaagccgttcagctgcgacCTCTGCGACTATAAATGCCGGCAACTCAATAAGCTGAAAAACCACAAGCTGAAGCACACCGATGAGAAACCCTTCTTCTGTGCTCTCTGCGAATACAAGTGCCGACGGATCGGGGAGTTGAAAGTCCACGTGCTGATACACACaagcgagaagccgttcggttgcgatctctgcgattataaatgccggctgCCCAGCGATTTGAAGAAGCACAAGTTGAagcacaccgatgagaagccGTGTAAACGAATTTCCGAAGCCAACACTGTACACGCCGAGAAATTCAAGTGCCCGATATGCGGCTATCGATTTACGCGTGGCGCGAGTTTGCCCCGGCAcatgttaatacacaccggcgagaagccgttcaattGCGACTATTGCGGTTACAGATGCCGACAGCTCGCGAGTCTGAAACGGCACAGGTTAACGCACGCCAACGAGAAGCCGTTGAGctgtgacctctgcgattataaatgccgactgCCCGAAACTCTGAAAGATCACAGACTCAatcacaccgacgagaagccgttcagttgcgacaATTGCGACTATAAGTGCCGACAACGCAAGCACATGAAACAGCACATGTTAAAGCACGCCCGCGAAATGACCTTCATCTGTGGTCATTGCCAATATAGATGTCGTCGGCCAGAAACTTTGAAGAGGCACATGGTGCAACACACCGACCAAAAACCTCTACGTTCGTAG
- Protein Sequence
- MLIHVDAKPFACDLCDFKSRHAAHLRQHKLTHSDEKPFACDLCDYKSRLNRDLKIHALIHTGEKPFACDLCDYKCRNADHLKLHKLKHTDEKPFGCDLCDYRCQQLRLLKQHKLRHVDEMAASCGLCDFKCRLGRDLKFHMLVHTGEKPLSCDLCEYKCLKAGLLKQHRLKHTDQKPYGCELCDYKCRKVGLLKQHRLTHTGEKPFGCDLCDYKGRSAGHLKEHKLTHTVEKPFACDLCDYKCRRVGHLNEHKLTHSGEKPLSCDLCDYKCRQLRYLNLHKLRHTDEKRFRSRKAKIARKFECPICNAKHRQRADLHKHMLVHTGEKPFKCDLCDYECRQVGNLKRHILIHTGEKAFSCGLCEYECREIGRLKAHMTRHTGEKLFSCNFCDYKSENPDDLKKHKLKHTNAKPFGCDLCDYKFRHSYELERHMLKHTDEKPFGCDLCHHKFRQASNLRAHMLTHTDEKPFFCGLCDFRCRQVGNLKKHVAIHTDECPLSCNFCDYKCRQAERLKAHMSQHTGEKPYSCDICGFKSGHAGDLKKHKSKHTNANKPLCCDLCDFKYRHPNELRKHMLKHTDEKPYRCDLCDFKSRLASSLKVHKVTHADEKPFFCGVCDYKCRQAGNLKKHMLIHTDECPFTCNICDYKCRQVGCLKEHMLIHTDEKPLRIPEAEIKTFECRQCHAQLKSRRNLRDHTLTHTDEKPFGCDLCDYKCRQVKHLKRHKLKHAVEKPFFCALCDYKCRQVGSLKAHMLIHTGEKPYGCGLCDYKCRHPTSLKRHMLRHASEESYSCDLCDYRCRNASRLAYHKLTHADGKPFGCDLCEFKCRQAESLKEHKLTHTGDQPLSCYLCDYKTLHVPRLRRHIRTHTDEKPFSCDLCDYKCRDVAYLKRHKLRRIPKAADLSECRICHAKLKSRKDLRKHYLTHTDEKPYGCDVCDYKCRQFAQLKQHKLKHTDEKPFLCGHCDYKCRRIGELKVHALIHTSEKPFSCDLCDYKCRQLNKLKNHKLKHTDEKPFFCALCEYKCRRIGELKVHVLIHTSEKPFGCDLCDYKCRLPSDLKKHKLKHTDEKPCKRISEANTVHAEKFKCPICGYRFTRGASLPRHMLIHTGEKPFNCDYCGYRCRQLASLKRHRLTHANEKPLSCDLCDYKCRLPETLKDHRLNHTDEKPFSCDNCDYKCRQRKHMKQHMLKHAREMTFICGHCQYRCRRPETLKRHMVQHTDQKPLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -