Pinq024544.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- Zfa
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:50619508-50629704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0025 0.15 13.5 3.8 2 23 67 88 67 88 0.98 2 31 7.7 4.8e+02 2.5 0.2 3 23 91 111 90 111 0.93 3 31 0.0007 0.044 15.2 0.6 1 23 117 140 117 140 0.98 4 31 0.013 0.82 11.2 0.4 1 19 146 164 146 168 0.95 5 31 1.6 1e+02 4.6 1.8 1 10 174 183 174 194 0.96 6 31 0.0018 0.11 13.9 0.7 3 23 233 253 232 253 0.99 7 31 0.0014 0.088 14.2 2.9 1 23 259 281 259 281 0.98 8 31 5.2e-06 0.00033 21.9 2.4 1 23 287 309 287 309 0.98 9 31 0.018 1.1 10.8 4.0 2 23 388 409 388 409 0.98 10 31 0.22 14 7.3 0.3 3 23 412 432 411 432 0.97 11 31 0.0035 0.22 13.0 0.2 1 23 438 461 438 461 0.98 12 31 0.19 12 7.6 0.7 1 19 467 485 467 489 0.95 13 31 3 1.9e+02 3.8 1.8 1 10 495 504 495 514 0.97 14 31 1.9e-05 0.0012 20.1 1.2 2 23 526 547 525 547 0.97 15 31 0.018 1.1 10.8 0.3 2 23 556 577 555 577 0.96 16 31 0.0001 0.0065 17.8 2.7 1 23 582 604 582 604 0.99 17 31 2.8e-05 0.0018 19.6 1.6 1 23 610 632 610 632 0.96 18 31 0.00025 0.016 16.6 0.0 1 21 638 658 638 659 0.97 19 31 0.0018 0.11 13.9 0.8 3 23 681 701 680 701 0.99 20 31 8.6e-05 0.0054 18.1 2.3 1 23 707 729 707 729 0.97 21 31 0.00027 0.017 16.5 0.7 1 23 735 757 735 757 0.97 22 31 0.023 1.4 10.4 2.3 2 23 882 903 881 903 0.97 23 31 0.0014 0.09 14.2 0.4 1 23 907 929 907 929 0.97 24 31 7.3 4.5e+02 2.6 1.0 1 23 935 958 935 958 0.93 25 31 0.065 4.1 9.0 1.1 1 19 964 982 964 986 0.92 26 31 0.021 1.3 10.5 1.2 1 23 992 1015 992 1015 0.94 27 31 0.0028 0.18 13.3 4.9 1 23 1026 1048 1026 1048 0.97 28 31 0.0038 0.23 12.9 0.6 3 23 1055 1075 1054 1075 0.97 29 31 0.005 0.31 12.5 0.5 1 23 1081 1103 1081 1103 0.97 30 31 9.3e-07 5.8e-05 24.3 1.4 1 23 1109 1131 1109 1131 0.98 31 31 0.014 0.86 11.1 0.3 1 22 1137 1158 1137 1158 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCGCAGGGGTTGTTGTTTTACCTGACGCCCGACCCTCTTACTACGTTAAACGAAGACGCAAGTCTCCGTAAAACCGTCGAAATAAAGCAAGAACCAACTTTCGGGCCTGAAATTTGCACGGACGGCGTCCAAACGAAATTGCCCGGTTTCAAATCGCGCTATGCAGCCGCGCGCAgagcaaagaaagaaagaaagtgcgATATTTGCGGGAAGAACTTCAAGTGCCAGATAACTTTCAACAGACACATGGAGACCCACAAGATCTGCAAGCTGTGCTTCGTGAAATTCGAGGACATACTCGATTATATCCTGCACATGTCGTTTCACAGCGACGAAGAAAAATTCAAGTGCGTTTACTGCGATTATTCGACGCGGAGCGCCGACGATGTCACTTTGCATGTTAGGACGCGGCATGTCTTCGCGTACAAGTACACCTGTGAGATTTGCAATAAGGGCTTCGATTCGTTTGCGTTGTTCAGACAACACGATGTCGTTCACAGCGGTACGAAACCGTTCAAGTGCGAGATCTGCGGTAAGGACTTCCTGTGCCCGAGGTACGTTTCCGACCATAAGAAGAACTTTCACGACAAGGTTTCCGACGCCGAGGCTTCGCGGAAGGCGCGTCTGAGAGGCCGCGGAACAAAACGAGCGAAACCCCCCAACGGCCCACGCCCTAAATCCTACGCGCTGTGCGATATTTGCGGAAAACAACTGTCCAGCATGTTCATGCTGAAACAACATCTCAGAAGTCACAGGGGCGAAAAACCTTATTCCTGCAAGGTCTGCGGCAAAGCTTTCACATGCAAGCGTGAAGTCCAAAACCACGAAAGGACCCACACGGGGGAGAAACCGTACGTCTGCGAGACTTGCGGAAGAAGGTTCACTCACAGAAGCTCCCTCAAGATACACGAGAGGCTTCACACCGGCGAGCAGCCTTACAAGTCCTTGTTTTACCTGACGCTCTACCCGCTCACGACCTTAAAGGAAGACGCAGGTCTCCAAAAAACCgacgcaaaaataaaagaggaggaggaggagccGACTTCTTTCGAGTGCGAAATCTGCAAGGACGGCGTCCAAATGAAACTGCCCGATTTCAAATCGCACTATACATCCGCGCACAAAGGAACGAAACTTCCCGAACGGGCCTGGCCCAAGTGCAACATTTGCGCGAAGAACTTCAAGTGCCAAATAACCTTGAAGCGACACATGGAGACGCACAAGATCTGCAAGCTGTGCTTCGTGAAATTCGAGAACATGCTCGATTATATCCTGCACATGCGGGTTCACTGCGAGGAAGAGAAATACAAGTGCGTCTACTGCGATTATTCGACGGGGGACGCCGACGAGGTCACCTTGCACGTGAGGACGCGGCACGCAAGCGCGCACAGGTACACGTGTGAGACTTGCAATCAGGGCTTTGATTCGTTTGCGTTGTTTAAACAACACGACGTCGTTCACAGCGGTGCGAAACCGTTTAAGTGCGACGTCTGCGGTAAGGACTTCCTGTGCCCGAGGTACGTTTCCGACCATAAAAAGAACGTCCACGACAAGGTTTCCGACGTCCAAGAATGCGGAATATGCAAGAAGAAAGTCAGCAGTAGAGGTAGCCTGAGGCGACACATGAAGACCCATTCTGGAAATAAACTGATCACGACGACGTGTAAGGTCTGTGGTACGCAGCTGTCAAATGGTGAGACGCTAAAAGAACACATGGTGAGTCACGGAGATAAACCGTATAAGTGTCTCAAATGCGAAAAGTCTTTCCGCAAAAAATTCGGCCTGTTGAAACACGAAAGGGTCCACAGGGGTGAGAAACCGCACGCCTGCGAGTTTTGCAACAAGGCCTTCGGCCAGCGTTACAACTTGATCGTGCACACCCGCACGCACACCGGCGAGCGGCCGTACGTCTGTCACATCTGCGGCAAGGGGTTCATCGCCAGGGCTTTGCTCAACGTGCACCTCAGGGACTGCAAGGCGAAACGCGAGAAACCCCCCAGGCCCAACAGGCCGCGCGCAGAGCCCTACGTGCTGTGCGATATTTGCGGAAAACAGCTGACCACCATGGACATGTTGAAATACCATCGCAGAAGTCACGTGGGCGACAAGCCTCATTCCTGCAAGTTCTGCGGCAAGGCTTTCACGCGCAAGCCGCGACTCCAAGAGCACGAAAGGGTCCACACGGGGGAGAAACCGTTCGTCTGCAAGACTTGCGGAAAAGGCTTCACGCAAAGAACCCCCATGAAGGTGCACGAGAGGCTTCACACCGGCGAGCGCCCCTACAAGTGCAGACTGTGCAACAAGGGATTGCTGGATTACCTAACGCCGATCGTGACCTTGAACGAGGGCGAAAGGGCGGAAGCCAAGCGGAATTTCCGCCGGAAAGGCCGGCCGAGGAAAAAGACGCCCAGGAAGATCGACTTGGCGCGTCTCGAGAAACAAGAACGGGAAGACGAGGACGATGACGAGGCGGAAGAAGGGGTTGGCGGGGGTGAGCTTGCGCCAACCGCGACTTTCAACTGCAGGATTTGCAAGGACGGCAACAAGATGGCGCTGTCGGATTTCAAGCTGCATTATAAATCCGTGCACAAGGACAAGAGGCTGCCGCGTTCGGCGAGGGTCCCCTTCGTCCTGCAGACCTGCGACATCTGCGCCAAGAACTTTAAGTGTTTGAGGAACCTAAACGAGCACATGGAGACCCACAATAACCAGTTTGACTGCGACGTGTGCGGCGTGAATTTCAAGAAAGTCCTCGATTACACCCTGCACATGCGCACTCATTGTCCGGAGGGGATCTTCAAGTGCATCTACTGCGACTACTGCACGCCGAACATAAACGACATCACTTTGCACCTGAGTATACAGCACGAGAGCAAGCATAAATACACGTGCAAAATCTGCAACAAGGGGTTTGATGTGTTGACGTGGTTCAAAGAGCACGATAATTTCCACAGCGGTACCAAACCTTTCATCTGCGAGTTCTGCGGCAAGAGCTTCTTGTACTCGCGGTATCTTTCCGCGCATAAGAGCAGCATGCACAAGGAAATCATAACCGGCGTCTCGAACATCCACGAGTGCGTCATCTGCAAGAAGAAGTACCAACACAAGAACAGCCTGAAGCTGCACATGAATGTTCACACCGGCAACGTCGCAATCTGCGAGGTATGCGGCAAGCAGCTCTCGAGCAAAGAGAAGCTCAAGTTTCACATGCGCATTCACACCGGCTATAAACCGTTTAAATGCGTCTACTGCGAAAAATCCTTCACCAAAAAACCGATCCTCGTGGAGCACGAGaggatacacaccggcgagaggcCCTACGTCTGCGAGTATTGCCACAAAGCGTTCTCGCAGCGTTCCAGTTTGGTGATACACGTGCGCAGTCACACCGGCGAACGCCCCTACGTCTGCCACCTCTGCAACCGGGGGTTTGTCGCGAGGGCGATGCTGAACTTACATTTCAGGACGTGCAAGGGctacttcgtttaa
- Protein Sequence
- MASQGLLFYLTPDPLTTLNEDASLRKTVEIKQEPTFGPEICTDGVQTKLPGFKSRYAAARRAKKERKCDICGKNFKCQITFNRHMETHKICKLCFVKFEDILDYILHMSFHSDEEKFKCVYCDYSTRSADDVTLHVRTRHVFAYKYTCEICNKGFDSFALFRQHDVVHSGTKPFKCEICGKDFLCPRYVSDHKKNFHDKVSDAEASRKARLRGRGTKRAKPPNGPRPKSYALCDICGKQLSSMFMLKQHLRSHRGEKPYSCKVCGKAFTCKREVQNHERTHTGEKPYVCETCGRRFTHRSSLKIHERLHTGEQPYKSLFYLTLYPLTTLKEDAGLQKTDAKIKEEEEEPTSFECEICKDGVQMKLPDFKSHYTSAHKGTKLPERAWPKCNICAKNFKCQITLKRHMETHKICKLCFVKFENMLDYILHMRVHCEEEKYKCVYCDYSTGDADEVTLHVRTRHASAHRYTCETCNQGFDSFALFKQHDVVHSGAKPFKCDVCGKDFLCPRYVSDHKKNVHDKVSDVQECGICKKKVSSRGSLRRHMKTHSGNKLITTTCKVCGTQLSNGETLKEHMVSHGDKPYKCLKCEKSFRKKFGLLKHERVHRGEKPHACEFCNKAFGQRYNLIVHTRTHTGERPYVCHICGKGFIARALLNVHLRDCKAKREKPPRPNRPRAEPYVLCDICGKQLTTMDMLKYHRRSHVGDKPHSCKFCGKAFTRKPRLQEHERVHTGEKPFVCKTCGKGFTQRTPMKVHERLHTGERPYKCRLCNKGLLDYLTPIVTLNEGERAEAKRNFRRKGRPRKKTPRKIDLARLEKQEREDEDDDEAEEGVGGGELAPTATFNCRICKDGNKMALSDFKLHYKSVHKDKRLPRSARVPFVLQTCDICAKNFKCLRNLNEHMETHNNQFDCDVCGVNFKKVLDYTLHMRTHCPEGIFKCIYCDYCTPNINDITLHLSIQHESKHKYTCKICNKGFDVLTWFKEHDNFHSGTKPFICEFCGKSFLYSRYLSAHKSSMHKEIITGVSNIHECVICKKKYQHKNSLKLHMNVHTGNVAICEVCGKQLSSKEKLKFHMRIHTGYKPFKCVYCEKSFTKKPILVEHERIHTGERPYVCEYCHKAFSQRSSLVIHVRSHTGERPYVCHLCNRGFVARAMLNLHFRTCKGYFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -