Pinq024521.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:50551314-50558549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.6e-05 0.0048 18.2 0.7 2 23 120 142 120 142 0.93 2 20 0.00055 0.034 15.5 0.6 1 23 147 169 147 169 0.97 3 20 2e-05 0.0012 20.1 0.7 1 23 175 197 175 197 0.97 4 20 0.00048 0.03 15.7 1.4 1 23 204 227 204 227 0.96 5 20 0.0018 0.11 13.9 0.6 1 23 232 254 232 254 0.99 6 20 0.008 0.5 11.9 2.8 1 23 263 286 263 286 0.96 7 20 6.7e-05 0.0042 18.4 0.2 1 23 291 313 291 313 0.98 8 20 1.6e-07 9.8e-06 26.7 0.8 1 23 319 341 319 341 0.98 9 20 3.4e-05 0.0021 19.3 0.2 1 23 347 370 347 370 0.97 10 20 4.6 2.9e+02 3.2 0.2 1 9 376 384 376 385 0.90 11 20 0.017 1 10.9 0.1 2 23 419 441 419 441 0.93 12 20 0.0014 0.09 14.2 0.7 1 23 446 468 446 468 0.99 13 20 0.00098 0.062 14.7 1.3 1 23 474 496 474 496 0.98 14 20 0.03 1.8 10.1 0.1 1 23 502 525 502 525 0.88 15 20 0.00041 0.026 15.9 2.0 1 23 530 552 530 552 0.98 16 20 0.008 0.5 11.9 4.0 1 23 561 583 561 583 0.98 17 20 1.8e-05 0.0011 20.2 0.4 1 23 588 610 588 610 0.98 18 20 2.3e-06 0.00015 23.0 1.0 1 23 616 638 616 638 0.98 19 20 9.6e-07 6e-05 24.2 0.5 1 23 644 667 644 667 0.97 20 20 0.0001 0.0065 17.8 1.5 1 23 673 695 673 695 0.96
Sequence Information
- Coding Sequence
- ATGAGAAGGGCGACCCGTTTTCCAAGCCGTAAGAGTTTTCTCGCCCCAAAACAGATGAAGACAGTCGGAGGAGGAAAGGCGGTGGTAACTGTTGACCGTACAAAAACGCACGTGCGTTTTAAAGAAAAGGGCGGCCCGTTTTTCAAGCCacttGCCGTTGGTGTTCGGAAGGAGGAGGACACTTGCTGGAAATTCGACGAAACGAAATTTCTCGCATCTTTAGTAGCAGTTAGCGTAGAGACCAAACCGAACGTAACAGAAGAAGGAATGTACTTGCTGCCTTCAGTTGAGGAATTCCAGAGGAAGTTGCAAGTTCAGAAACAGAACGAATACGTCACCACTATGGAAAAAGCGGCGACGTGTACAGTCTGCAACAAAAGTTTCGATACACCCCGCCAGTTGGTCAAGCACAGGGGGAGGGCGCACAGGGTCAAAGTCCACGAGTGTGCCGTGTGCAAAAAGGCGTTCGCTTTGCCTTTCCAACTGAACCGCCACAAGTTAATCCACGAGGCGGGCAAGGCGTACCCGTGCGATTCGTGCGGGAAGACGTTCAAAACCGTCGAAACGTTGCGTAACCACACGAACCTGCACACGGGCGCCGGAAAGAACTTCCGGTGCGAAACGTGCGACAGGAAGTTCGCCAGCTCCCGCTTCCTCCGTGACCACACCGAATCCGAACACCTGAACATCAAATACAAGTGCGGCGTTTGCGGCAAGGAGTACCGCTGGCTGAACTACCTAAAGCTGCACGAGAGGACGCACGACGCTCACTTCGTGGCGAAGCTGCACAAGTGCGCGCAGTGCGGCGCGCAGTTCAAGCACACGGTGACCTTGAGGAACCACGTGTCGCGGGTGCACATGGGGAAGCTGTACGTTTGCGACGTCTGCGGCAAGGAGGTGACGTCCCTGACCAGCTTCAAGAATCACGTGcggatacacaccggcgagaagccgttcatcTGCGAGGTCTGCGGCAAGAGCTTCACCACGAAGAAGTTATTAAAGACGCACGTCCGCGTGCACACCAAAGAGAAGCCCTACCCTTGCAAGTGGTGCGGCAAGAAGTTCTCGCAGGTCGGCTCGGTTAAGGTTCACGTGCGAAGCGTGCACCGGCACGAAAAACCATTCGAGTGCAGCATTTGTAACAAGAGATTGCTTCCGAACAGCACAGCGTCGGTGCGCAGCGTGCAAGATTACTTGCTGTTCCTCCAACTGGCGCCGCCCAAGACCTTCGTAAACCACGAACCTCCCGCCCAATGCGGCCTTTGCGGGGAAATCTTCCCCAATAAGCGCAAGCTCTACTACCACAAGGACGTCGCGCATAAGCCGAAGATCTTTCAGTGCGACGTGTGTCCGATGGCGTTCCAGAACGTGCACAGGTTGAGGGCGCACGCGCGACGGCACGACCCCCACCGAAAATACAGCTGCGACCTCTGCCTGGCGACTTTCAAGCGGAAATCGTCGCTCGACCTTCACACGCAAAGACACGAGGGCAATTACCAGTTCGTGTGCGAGACTTGCGGCAAGGCGTTCCTCCTCTTGGCCGATCTGAGACGTCACAACGACATTTTCCACCTGAACGTGAAGCACAAGTGCGAGATCTGCGAGAAGGAGTTCCAGTCCGTGTTCTACCTGAAGGCGCACGTGAAAACGCACGATCCCAACCAAACCCGAAAACCCTATCGCTGCACGATCTGCGGCCAGGAGTACGCCAACCACTCGGGTCTTAGATGCCACATGTACAAGCACACGGGGAAGGTGTTCGTCTGCGATTCCTGCGGGAAACAGCTGTCGACCCCCGACAAGCTCAAGTACCACATGaggatacacaccggcgagaaaccgtacgCCTGCCACACGTGCGGCAAGGCCTTCACTAAGAAGAACATGCTCGTCGAGCACATACGGGTCCACACCAAGGAGAAGCCTTACCCGTGCAAGATCTGCGGAAAGTTCTTCACGCAGAGGTCGTCCGTGACGATACACATCAAATCCGTGCACTCGGACGAGAAACCATTCGCGTGTTGCATCTGCGACAAGAAGTTCGCCACGCAGGGCCTCCTCAACATTCATTCGAAATCGCACGGCGGTCTCAACACTAACACTTAG
- Protein Sequence
- MRRATRFPSRKSFLAPKQMKTVGGGKAVVTVDRTKTHVRFKEKGGPFFKPLAVGVRKEEDTCWKFDETKFLASLVAVSVETKPNVTEEGMYLLPSVEEFQRKLQVQKQNEYVTTMEKAATCTVCNKSFDTPRQLVKHRGRAHRVKVHECAVCKKAFALPFQLNRHKLIHEAGKAYPCDSCGKTFKTVETLRNHTNLHTGAGKNFRCETCDRKFASSRFLRDHTESEHLNIKYKCGVCGKEYRWLNYLKLHERTHDAHFVAKLHKCAQCGAQFKHTVTLRNHVSRVHMGKLYVCDVCGKEVTSLTSFKNHVRIHTGEKPFICEVCGKSFTTKKLLKTHVRVHTKEKPYPCKWCGKKFSQVGSVKVHVRSVHRHEKPFECSICNKRLLPNSTASVRSVQDYLLFLQLAPPKTFVNHEPPAQCGLCGEIFPNKRKLYYHKDVAHKPKIFQCDVCPMAFQNVHRLRAHARRHDPHRKYSCDLCLATFKRKSSLDLHTQRHEGNYQFVCETCGKAFLLLADLRRHNDIFHLNVKHKCEICEKEFQSVFYLKAHVKTHDPNQTRKPYRCTICGQEYANHSGLRCHMYKHTGKVFVCDSCGKQLSTPDKLKYHMRIHTGEKPYACHTCGKAFTKKNMLVEHIRVHTKEKPYPCKICGKFFTQRSSVTIHIKSVHSDEKPFACCICDKKFATQGLLNIHSKSHGGLNTNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -