Pinq024567.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:50790858-50796961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.012 0.73 11.4 0.8 1 23 90 112 90 112 0.98 2 35 0.002 0.12 13.8 2.9 1 23 118 140 118 140 0.96 3 35 0.00026 0.016 16.6 0.5 1 23 146 168 146 168 0.96 4 35 0.0007 0.044 15.2 3.1 1 23 174 196 174 196 0.98 5 35 0.01 0.65 11.5 2.3 1 23 202 224 202 224 0.99 6 35 0.041 2.6 9.6 5.1 1 23 230 252 230 252 0.98 7 35 8.6e-06 0.00053 21.2 2.3 1 23 258 280 258 280 0.99 8 35 0.00035 0.022 16.1 2.9 1 23 301 323 301 323 0.98 9 35 0.014 0.87 11.1 2.3 1 23 329 351 329 351 0.97 10 35 0.00073 0.046 15.1 1.3 1 23 357 379 357 379 0.99 11 35 0.00041 0.026 15.9 1.6 1 23 385 407 385 407 0.98 12 35 0.013 0.82 11.2 3.7 1 23 501 524 501 524 0.97 13 35 0.00021 0.013 16.9 2.2 2 23 531 552 530 552 0.97 14 35 0.88 55 5.4 3.9 1 23 558 580 558 580 0.96 15 35 0.02 1.2 10.7 2.3 1 23 586 608 586 608 0.98 16 35 0.045 2.8 9.5 4.0 2 23 615 636 614 636 0.97 17 35 0.005 0.31 12.5 0.7 2 23 643 664 642 664 0.95 18 35 0.022 1.3 10.5 0.7 1 23 691 713 691 713 0.97 19 35 0.0011 0.066 14.6 4.3 1 23 719 741 719 741 0.98 20 35 0.0049 0.31 12.5 1.2 1 23 747 769 747 769 0.98 21 35 0.0024 0.15 13.5 1.2 1 23 775 797 775 797 0.97 22 35 0.00016 0.01 17.2 1.4 1 23 803 825 803 825 0.98 23 35 0.048 3 9.4 1.4 2 23 833 854 832 854 0.95 24 35 0.00055 0.034 15.5 0.2 1 23 860 882 860 882 0.98 25 35 0.0018 0.11 13.9 3.6 1 23 888 910 888 910 0.98 26 35 0.00052 0.033 15.6 2.4 1 23 940 962 940 962 0.98 27 35 0.00097 0.06 14.8 1.8 1 23 968 990 968 990 0.94 28 35 0.0029 0.18 13.2 0.6 1 23 996 1018 996 1018 0.97 29 35 0.00064 0.04 15.3 4.4 1 23 1024 1046 1024 1046 0.99 30 35 0.00041 0.025 15.9 1.6 1 23 1052 1074 1052 1074 0.98 31 35 3.1 2e+02 3.7 0.6 2 23 1084 1105 1083 1105 0.95 32 35 0.0083 0.52 11.8 0.1 1 23 1111 1133 1111 1133 0.98 33 35 0.0045 0.28 12.7 0.3 1 23 1139 1161 1139 1161 0.97 34 35 0.0017 0.1 14.0 2.2 1 23 1169 1191 1169 1191 0.97 35 35 9.3 5.8e+02 2.2 0.3 1 23 1197 1220 1197 1220 0.91
Sequence Information
- Coding Sequence
- ATGTCACGTACCGACGAAAACCCTCAAACACAGAAAGAGAAGTGTCGTGCTCACCAAGAAGACGCATTCTTACCTAACCTCAAAACCAAACTTTCGCATTTTGCGTTACGTACCGGCGAAAAACCACCTGCGAATTCATCCACACGCGAAAACAAGAAGACGCTCGAATGCAAGCGTCCCGCTCAGTTAAAGAAACACGCGCCAGAGTGCGCGCACAACCGAGATGAAAACATCCGCGCGCATTCCGAGGCGCGTCCCGACAGACCGTTCAAGTGCGCCCTCTGCGCCCACGCGGCGAAAACCAAGTCGGATTTGAACAAGCACGCGCTGACGCACACCAGCGAAAAACCGCACGCTTGCGAAGTTTGCGGTTACAAGTGCAAGCTGAAAGTAAACCTGACGCGCCACCTCGTGAcccacaccgacgagaagccgttcgcgtGCGCCGTCTGCCAACGCAAGTTCCGCCATCCCGCCGGCTTAAAAAAACACGCGGCGACGCACAGCGGCGAGAAACCCTTCAACTGTACCCTATGCGAGTACAAGTGCGGCCGGCCGGAGTACTTGAAGAAGCACATGATGACGCACAGCGACGAGAAGCTCTTCAAGTGCAACATCTGCGAATACAAATCCAATCGCCATTTGTTATTAGAAAGGCACGTGCTGACGCACACGGGCGAGAGGCCGTTCAAGTGCAGCCGATGCGATTTCCGGTGCAGTCTGAGCAGGAATTTGAAAACGCACGAGCTGACGCACACGCGCGAAAAACCGTACAGGTGCGATTTCTGCGGGTACACGTGCCGCCGGAGTGACGCATTGAAGGCGCATTTGATGACGCACACCGGCAAAAgcacaacaattaaaaaatccggaagcgtcggcgtcggcgtcgcCAGGCCGTTCAGGTGCGGACACTGCGATTATGCCTGCGCGAACTCGAGCCGGTTAAAAGCGCATTTGCTGACGCACAGCGTCGAAAGGGCGTTCGCGTGCGAGcgctgcgattacaaatgcggTTTCGCCAAGTACTTGGCGAGGCACATGATgaagcacaccggcgagaaaccgtacaAGTGCGATCGCTGCGATTACGGCGCCAGCCAATCGTACAGGTTGAAGACGCACATGatgacgcacaccggcgagaagccctACAGCTGCAACGTATGCGATTCGCGGTTTAGACACGCCGACGTCCTGAAGAAGCACGTGCTGACGCACGCCGGTGAAAAACCGTCGCTGAAGTGTAAGCTCTGCGATTACGAATGCGGCGCGCTGAAATCGCATCTGTCGACGCACGCCGGCGAGAAGCCCATTAAATGTGATTATTCTCGGTACCAGTGCGATTTGAAGGAGAACTTATCGGTGCATGGAGATGAGAAGACTTTCGATTGCGAAGTTTGCCACTTTAAGAGCGCCAATTGTGAGACGCCGACGGAAAAAGTGTTCATAAAAACGGAGCGCCGAGACAAGCCGACAAAGTCCGACGGAGACCGTCCGTTCTCGTGCCTTACCTGCCATTACCGGAGCGCTCGCCGCAAAGACCTCAACAGGCACGTGCAGACGACGCACGCCCCTGAGAAGCTCCTCAAGTGCAACCTGTGCGCGTACCGGTGCAGCAGAGCCGACAACCTGAAGCGGCACATGGGCACGCACACCGACTACAAGCCGCACAAGTGCGACCTGTGCGGATACAGGTGCTTGCGCGGCGAGACCCTAAAAAGACACCTGTACATACACACCGACGATAAGCGTTTCAAGTGCGAGCTGTGCGATTACGGGTGTCAACGCGCCGACGTCCTCAAGAGGCACAGGTAcatgcacaccggcgagaaaccccTCAAGTGCAACCGTTGCGGCTACAGCTGCATTAGCACCGAGAGAATGAAAAAGCACATGTACACGCATACAGGCGAGAAACCACTGAAATGTTACGTCTGCGATTACAGTTGCATCGAGGCGACGAATTTAAAGCGACACGTGCTCGCGCACGCGGACGAATCGCCgggGGTTAAACACGTCGCCGCCCCCGTTCGCAAACGAAAACCGCCGAGGCGCAGCGACAAGAACTTCGATTGCTCCATCTGCGATTACAAAACGAACGCGTTTCGCAGCTTGAACGTGCACATGTTgaggcacaccggcgagaagcctttCACGTGCCGcgtctgcgattataagtgcacGACGTCCGGGAGTTTAAAGCGACACGTTTTcacacacaccggcgagaagccgttccaGTGCGCGCTCTGCGATTATAGGGCGAACAACGCGGCGCACCTGAAGACGCACCGCCTGAGGCACACCGACGAAAAACCGTACGCGTGCGAGTTCTGCGATTACAAGAGCAGGCAGGTCGGGAACTTGAAGACGCACATGTATAAACAcacgggcgagaagccgttcaaaTGCAGCGTCTGCGATTACAGCTGCGGTCGGGCGGGGAATTTGAAGCTACACCGCCAGGTTCACGCGCGCGATAAAAAACAGTTGCAGTGCGAAGTTTGCAATTACAAGTGCAACTCGGCCAATCGCCTGCGGAAGCACGTCGTGATACACGCCGGCGCGAAGCCGTTCAAGTGCGAGTTGTGCGACTACGCGAGCTCTTCCCCCGGCTATTTGAAGACGCACGCACTGACGCActccggcgagaaaccgttcaagtGCGAGCTGTGCGACTGCAGGTTTTACACGCCGGCGCGCTTGAAGAAGCACACTCTGTCGCACACCAGCGATAAACCGTTTAAATGCAGCCAGTGCAATTACAGgcgTAAATACACCGACAGACACAAGAAGCGCGGCGACGGGAAGCACTTCGAATGCCCCCTCTGCGATTACACGTCGAGGTCGCATCAAAACTTAAAAGTGCACACGATgaagcacaccggcgagaagccgttcgcctGCCCCGACTGCGACTTCAGGTGCGCGACGTCCGACAGCCTGAGGCGGCACAGTTTCATGCACAGGGGCGAGAAACCGTTTCCGTGCGACCTGTGCGATTACAGGGCCGTCACCGCGTCGCACCTGCGCTCGCATTCActgacgcacaccgacgagagaCCGTACCGATGCGAACTGTGCGATTACAGGTGCAAGAAAACGGGGAACTTGAAGACGCACATGCTGAAACACACCGGGGAGAAGCCGTACAAATGCGAGCTCTGCGATTACCGGTGCAACCAGGCGGGAAACCTGCGGATACACTCGAAGGTGCACACGCGCGTCAAGATCAAGAAACAGCTGGAGTGCGAGTCTTGCGATTTTAAGTGCGGCTCGGCGAATAAGATGAGGGTGCACGTCGCGATGCACAggggcgagaagccgttcaagtGCGACCTGTGCGATTTCGCGAGCTCCACGCCGGGGTCGGTGAGGGCGCACGCgctgacgcacaccggcgagaaaccgttcgagTGCGAGATCTGCGGCTCCAAGTACTACACGGCGGCGCGCTTGAAGAAGCACGCCCTGTCGCACACCGGCGATAACGACAAACCGTTCAagtgcaaccagtgcaattacAGGTGCGCCACGTCCGCGAATTTAGGCCGACATCGTCTGGCACACACCAGCCAAAAACCGTTCAAGTGCAAAGCTTGTAGCTTTCAGACCGTCGCGTTCGAGAACCTCAACCAACACGTGCTGGCGGAACATAACggcgaaaacaattga
- Protein Sequence
- MSRTDENPQTQKEKCRAHQEDAFLPNLKTKLSHFALRTGEKPPANSSTRENKKTLECKRPAQLKKHAPECAHNRDENIRAHSEARPDRPFKCALCAHAAKTKSDLNKHALTHTSEKPHACEVCGYKCKLKVNLTRHLVTHTDEKPFACAVCQRKFRHPAGLKKHAATHSGEKPFNCTLCEYKCGRPEYLKKHMMTHSDEKLFKCNICEYKSNRHLLLERHVLTHTGERPFKCSRCDFRCSLSRNLKTHELTHTREKPYRCDFCGYTCRRSDALKAHLMTHTGKSTTIKKSGSVGVGVARPFRCGHCDYACANSSRLKAHLLTHSVERAFACERCDYKCGFAKYLARHMMKHTGEKPYKCDRCDYGASQSYRLKTHMMTHTGEKPYSCNVCDSRFRHADVLKKHVLTHAGEKPSLKCKLCDYECGALKSHLSTHAGEKPIKCDYSRYQCDLKENLSVHGDEKTFDCEVCHFKSANCETPTEKVFIKTERRDKPTKSDGDRPFSCLTCHYRSARRKDLNRHVQTTHAPEKLLKCNLCAYRCSRADNLKRHMGTHTDYKPHKCDLCGYRCLRGETLKRHLYIHTDDKRFKCELCDYGCQRADVLKRHRYMHTGEKPLKCNRCGYSCISTERMKKHMYTHTGEKPLKCYVCDYSCIEATNLKRHVLAHADESPGVKHVAAPVRKRKPPRRSDKNFDCSICDYKTNAFRSLNVHMLRHTGEKPFTCRVCDYKCTTSGSLKRHVFTHTGEKPFQCALCDYRANNAAHLKTHRLRHTDEKPYACEFCDYKSRQVGNLKTHMYKHTGEKPFKCSVCDYSCGRAGNLKLHRQVHARDKKQLQCEVCNYKCNSANRLRKHVVIHAGAKPFKCELCDYASSSPGYLKTHALTHSGEKPFKCELCDCRFYTPARLKKHTLSHTSDKPFKCSQCNYRRKYTDRHKKRGDGKHFECPLCDYTSRSHQNLKVHTMKHTGEKPFACPDCDFRCATSDSLRRHSFMHRGEKPFPCDLCDYRAVTASHLRSHSLTHTDERPYRCELCDYRCKKTGNLKTHMLKHTGEKPYKCELCDYRCNQAGNLRIHSKVHTRVKIKKQLECESCDFKCGSANKMRVHVAMHRGEKPFKCDLCDFASSTPGSVRAHALTHTGEKPFECEICGSKYYTAARLKKHALSHTGDNDKPFKCNQCNYRCATSANLGRHRLAHTSQKPFKCKACSFQTVAFENLNQHVLAEHNGENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -