Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00072 1.3 10.1 0.1 14 40 112 135 105 138 0.89

2 6 5.4e-05 0.097 13.7 1.0 2 39 129 162 128 170 0.88

3 6 0.00037 0.66 11.0 1.2 1 39 156 190 156 197 0.89

4 6 1.4 2.5e+03 -0.5 0.8 17 40 199 219 191 222 0.79

5 6 0.0045 8 7.5 1.9 5 38 216 245 212 245 0.80

6 6 0.0024 4.2 8.4 0.2 19 41 257 276 252 285 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00072	1.3	10.1	0.1	14	40	112	135	105	138	0.89
2	6	5.4e-05	0.097	13.7	1.0	2	39	129	162	128	170	0.88
3	6	0.00037	0.66	11.0	1.2	1	39	156	190	156	197	0.89
4	6	1.4	2.5e+03	-0.5	0.8	17	40	199	219	191	222	0.79
5	6	0.0045	8	7.5	1.9	5	38	216	245	212	245	0.80
6	6	0.0024	4.2	8.4	0.2	19	41	257	276	252	285	0.82

Coding Sequence: ATGTCTTCGGAGGAAGTCCTGGTGCAAATCGCAGAGCCCGTAGTGGAAATGCTGGAAGAAAATTACACGTTGCTTCCCTACATCAAAGTGGATGATGAGGGGCTTATGGTTTTGAACGAGGAGATTTATGAGGAGCCAGGCAGCGATGAGCAAGTGCTTTGTGTCCCCATCGCCGAGACACTATTTGACTGTAGCATTGAGGGTGATATAATCGAGGAACAGGTGGAATCAGGCGGTTTCCTCAGTGAACATAACTATCATACTATTTCCAGTGGAGAGAACCAGTTGGATATGTATCTTGAGGATGTGCTCAGCAGGGATAGTCTCATTGCTAGTTCGAAACTGCAGTGTCCCTTGTGTATGAAGGTGTTGAAGGCGACTGATGCTTTCTATCGACATTTGAGGATTCATTCGGGGGAAAAACCATATCAATGTGAGCTTTGTGATAAGAAGTTTTCACAGCAGAGTAATTTGTGGAAGCACATCCTTATACACACAGGAGAAAGAAGATTTGAATGTCCCCAGTGCGCCAAGAAATTCTCTCAGAGAGCCAACATGCAAAAGCACATGATGGTTCATACCGGCGAAAAACCTTTCGAATGCTACATTTGCTCGAGGTTGTTCACTCAAAGAGCGAACTTGAACAAACACATTAGAATACACACAGGAGAGAAACCTTACACTTGTAAATACTGCAGCAGACAATTTGCACAACAATCGAACATGCAGAAGCACGAACTTCTTCACAAAGGCCTTAAACCGTTTGCGTGTGGAATTTGTTCGGCTGCCTTCGCTCAGCAGAGCAACCTGAAGAAGCATCTCGTGACGCACTTCAACAAAGAGAGGACCCACAAGTCCATCGCAACACGTGATTTGTCTAAGTCATATTCTGTAGTTTGTGAAAACCCTTATACCAAAACTGGGTTTTTTCACGGACAAGTAAAAGACTGTATAGTTGAACCGGGAACGTTCCTAGACACATTTGGCACTGGTAGAAACCAAGTCTACTTTGATTCGTCCAGCAACGTGAAAATCGAGATCGAGGTCGAACCAAAGAGATCATTTTAA
Protein Sequence: MSSEEVLVQIAEPVVEMLEENYTLLPYIKVDDEGLMVLNEEIYEEPGSDEQVLCVPIAETLFDCSIEGDIIEEQVESGGFLSEHNYHTISSGENQLDMYLEDVLSRDSLIASSKLQCPLCMKVLKATDAFYRHLRIHSGEKPYQCELCDKKFSQQSNLWKHILIHTGERRFECPQCAKKFSQRANMQKHMMVHTGEKPFECYICSRLFTQRANLNKHIRIHTGEKPYTCKYCSRQFAQQSNMQKHELLHKGLKPFACGICSAAFAQQSNLKKHLVTHFNKERTHKSIATRDLSKSYSVVCENPYTKTGFFHGQVKDCIVEPGTFLDTFGTGRNQVYFDSSSNVKIEIEVEPKRSF

Sequence clustering based on sequence similarity using MMseqs2