Pinq018971.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069874.1:50433302-50433823[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-10 2.7e-07 31.1 0.0 2 39 16 53 15 58 0.92 2 2 0.94 4.2e+02 1.7 0.1 12 23 134 146 131 148 0.75
Sequence Information
- Coding Sequence
- ATGGGGAGGATATACATGAGAAAAACAACCCGAGCTTCATGGAGTGAAGGGTCAATGGCTACTGCCACAGATAAAGTTAAAAGTGGAGAAATGGGAGTTAATGCAGCGAGTAGGGAATATAATATACCCTCAAGAACTCTTAGACGACACATAACTACTAATAGTTGTAAAAAATATCTTAGCCGATCTCCGCCATTATGCAGAGAACATGAAAGAAGCTTAATCTTGCATATACAAGCACTGGAAAAAGTTGGATTTGCCCCGAATAGAAGAGATGTTAAAAAGATGGCTTTTCAGTTTGCTGATAAACTGGATATTAAACATAATTTCTCACAAAAGGAAAATTCAGCTGGCAAAACTTGGTTTGAtggatttttgaaaagaaacaaaatcttaTCGATTAGAAAATCTGAAGGATTATCATTGTCAAGAGCACAAGGAATGAATAGGAAAGAAGTCGGTGATTACTTTTCTTTGTTGCTCCAAGTGTTATCAGACTGGATAAATTTTAACTGGATTTAA
- Protein Sequence
- MGRIYMRKTTRASWSEGSMATATDKVKSGEMGVNAASREYNIPSRTLRRHITTNSCKKYLSRSPPLCREHERSLILHIQALEKVGFAPNRRDVKKMAFQFADKLDIKHNFSQKENSAGKTWFDGFLKRNKILSIRKSEGLSLSRAQGMNRKEVGDYFSLLLQVLSDWINFNWI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465950;
- 90% Identity
- -
- 80% Identity
- -