Paka014269.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:11176847-11179930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.068 3.3 8.1 0.3 1 23 17 40 17 40 0.89 2 15 5 2.4e+02 2.2 0.3 3 23 45 66 44 66 0.93 3 15 0.13 6.4 7.2 0.2 3 23 229 252 228 252 0.92 4 15 5.8 2.8e+02 2.0 0.4 9 23 290 304 283 304 0.75 5 15 0.4 19 5.7 2.2 2 23 447 469 446 469 0.90 6 15 6.5 3.2e+02 1.8 0.2 12 23 516 528 515 528 0.90 7 15 0.15 7.6 6.9 0.6 1 21 540 560 540 563 0.89 8 15 0.23 11 6.4 5.6 1 23 602 625 602 625 0.93 9 15 0.0034 0.17 12.2 1.4 1 23 665 687 665 687 0.95 10 15 0.00034 0.016 15.3 2.9 2 23 693 714 693 714 0.97 11 15 2.8e-06 0.00014 21.8 1.9 2 23 720 741 719 741 0.97 12 15 0.00019 0.0094 16.1 3.6 1 23 747 769 747 769 0.99 13 15 8.2e-06 0.0004 20.4 3.1 3 23 777 797 775 797 0.97 14 15 7e-05 0.0034 17.5 1.4 2 23 804 825 803 825 0.97 15 15 0.24 12 6.3 2.5 2 23 833 855 832 855 0.96
Sequence Information
- Coding Sequence
- ATGGATAATTTGATTCTTGATACTTCTTCCTTTGGTCTAAGCAAAGTGTTTAGTTGTCTGGTGTGCGATCAAAAGTTCACTAACAAGCTAAAGATCGCTCTTCATTGGTCGATTAATCACAGCTATGACCTGTGTCCCTTATGTTCGAATTACGCCTTCAAAAATGAGTCCGATCGATTGGATCATGAGCGACAACATGTGCCATTCGGCTGCTCAAGTTGTGAACACGAATTCACGACTGTGTGTCATGAAACTATTAGTGCACATTACAAGAATGAACACTCCAGTTTCCTCTGCAATTATTGCTCGTCTGTCATCGAGCCTTATTCAAAACACCAAGAACACATTGAAAAGAGGCACAATGTTATCAGTTTTAGCAACATTGTGAACGATTTATTTGAGTTGACTGGTTCCGAAACGAAGTTCTTCAATTGCAAAATGTGTAACAAAAAGAAGCCCATCAATTTACTGTTTGGTCACTATGCGTTTTACCATAATTTGTCGATTCAGTCAATGAAACAGTACATTAGTAAAATACCAGAAATACGTATCGACGGATCGCAGTTGAATGATAGTGATTTAGAAGAGGGAGGAAGAGACACTTGCTCAGTCTGTGATAATCCAGTGTCGCCCGAGACCACAACGAAAGAAATTCATGAAGTGTTCTGTCAAGGTTTTGTCGCTTGTAATCTGAAGGATTGTAACCAGTTGTTTGAGGATAAGAAAAAATTGGCTGAACATCTCGATGTAGACCATCTTCCTGATTCATGCCGCTTTGGCTGTCGTGAGACCTATTTGAAACCTAGAGAAATAAGCGACCATCTTCATAATCTTCACGATATCGTCGAATGCTATTTGTGTAACATTGTCAACAGCTCTGGGAATTTTAAAAACCATCTTCGGGATAAGCATAGCGTTAATTTAATGACTTATGAAAAGGCACTGAGTAAAGCAACAACAAAACTTTATCGAGTTGAGTCATCACGTCGCAAAAAACAAGTTTTGTGCAATTTTTGTGATCTCGATATCACACAGGATATTCGTCAGTTTTCATTCATCGAGCACTATCGGGGCCATCATGAAATTAATATTGCCGCCATCATTCAGAATCTCGGAAAAAATCCAATCATTGACGTCATCCTAAATGATAAAAAAATGAAGACTGATGAGGAATGTCTGAAGAATTTTACTGTTATTCAAACAGACTCGATTGGTTCTATCAAAGATTTCATAGAAACCGATTTTGATGCCAGTAAAGTGTACTGTATTGGCTATGACTCACATCTGGAACTGAAACATCAGATTTTCGACACTGATGAATTAACCACATCACTTATTTCCTGTGATTTCTGCAAGAAAACTTTCGACGTTTCCTGCAGATTATATGAACATTTGACTGAATCTCATGGCTTCCGTTTATTGAATGTTGAGGATACATGCAATACGTGTCATGTGGATATTCTTAAAAATGAAAAACACATCGATGAGGATAACAAAACGTTTAATCTCTCATTGGTTTGCCCTCTTGACGATTCATATCATGTTACGAAAGACAATTTCAAGAATCATCTGAAGTTGGAACACCGTGATCCCGAATCGTCTACTGATCGAATTTTATACAAGTGCTTGGAATGCCAGTTCACTTACAAGAGCATGACAGAAGTTCGAGTTCATTTTGCAGCCATGCATCCTGATACCAAAATGAGCTATTGCAGCATATGCCGGTATAAGCTTAACGATCCAAGTCATGACACTGATCACTTTAACAAAAATCATTCAGAAAACCTCAAACAAATAGAAACGTTTTGTTGTAAATTATGCAAAAAGCAATTTAGTAAGAAGAACGCAGCAAGATCACACTACGAAAATTTTCACAAGGAGAAGGAGTTGAAGAAGAAGTTGGCTTTCAAATGCCAACTATGCAATGATGGTTTTCTAAGCACTGAGGATCGAAAAATGCATCAAATGGTCGCACATCCCAATGACAGGTTACATACGTGTAAATCGTGCCCATTGAAATTTGCAACCAAGAGCGGCTTGAGTAGTCATAATTTGATTCATAGGAATGTCATGAATACTTGCGAACACTGTAAAAAACAGTTTATTCGCCGTGATTCATATAAAGAACATCTTCTAATACATTCTGGTGTGCGTCAAAAATGTTCTTTCTGCACAAAGACGTTTGTGCAGCGTTCCAATTTGATTCGTCACGAGCGGATTCATCTAAATGAAAAACCTTACAAGTGTAATTTTTGTGAGAAAACGTTTTCTGATAAAGGAGCCTGCAATTCTCACATGAAGGTTCACACAAAGTCTGAGCACTCGAATTGTTCTGTTTGTGGGAAACACTTTGCTCGAAAGCAGAAATTAAAGTATCATATGAGAATTCACACCATGAAAGACATCCTCACATGTGACATCTGCAATAAAATTTTCACGGAATCGTATTCTTACCGAAAACATAAAGAAACACATTTAAAGAAGGGTAGAAATGATCAGTGCCATATTTGTATGAAGATATTGAAATCGAAGAAAGCCAAAGAAAAGCACATGATGAACTATCACAGTGACATGTTTCCGGAACCAGAATCATTGATTGAAACTCGTATTCGATGCTCCGTTTGTAACGGAAATGACTTTACAAGGGCGACAATTAAAGATCACTTGTCATCCGTTCACAAGATAGATGAATCAAACAATTGGGAAAGTTATGTTGGCGAAGTTGAATTTGAAATGGACATTGGTGAACAACAGATGATCGCGCATGACTAA
- Protein Sequence
- MDNLILDTSSFGLSKVFSCLVCDQKFTNKLKIALHWSINHSYDLCPLCSNYAFKNESDRLDHERQHVPFGCSSCEHEFTTVCHETISAHYKNEHSSFLCNYCSSVIEPYSKHQEHIEKRHNVISFSNIVNDLFELTGSETKFFNCKMCNKKKPINLLFGHYAFYHNLSIQSMKQYISKIPEIRIDGSQLNDSDLEEGGRDTCSVCDNPVSPETTTKEIHEVFCQGFVACNLKDCNQLFEDKKKLAEHLDVDHLPDSCRFGCRETYLKPREISDHLHNLHDIVECYLCNIVNSSGNFKNHLRDKHSVNLMTYEKALSKATTKLYRVESSRRKKQVLCNFCDLDITQDIRQFSFIEHYRGHHEINIAAIIQNLGKNPIIDVILNDKKMKTDEECLKNFTVIQTDSIGSIKDFIETDFDASKVYCIGYDSHLELKHQIFDTDELTTSLISCDFCKKTFDVSCRLYEHLTESHGFRLLNVEDTCNTCHVDILKNEKHIDEDNKTFNLSLVCPLDDSYHVTKDNFKNHLKLEHRDPESSTDRILYKCLECQFTYKSMTEVRVHFAAMHPDTKMSYCSICRYKLNDPSHDTDHFNKNHSENLKQIETFCCKLCKKQFSKKNAARSHYENFHKEKELKKKLAFKCQLCNDGFLSTEDRKMHQMVAHPNDRLHTCKSCPLKFATKSGLSSHNLIHRNVMNTCEHCKKQFIRRDSYKEHLLIHSGVRQKCSFCTKTFVQRSNLIRHERIHLNEKPYKCNFCEKTFSDKGACNSHMKVHTKSEHSNCSVCGKHFARKQKLKYHMRIHTMKDILTCDICNKIFTESYSYRKHKETHLKKGRNDQCHICMKILKSKKAKEKHMMNYHSDMFPEPESLIETRIRCSVCNGNDFTRATIKDHLSSVHKIDESNNWESYVGEVEFEMDIGEQQMIAHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -